Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00446 ATGCCGTTACCAAGAAGGGTGACAAGGGATCAAGGAGGACAACCTGGTCGAACGCTAACTGAAGATGAAAGAATAACTCTAAGAAACTTTTCCATGAGATGGAATGCTCATATCAATGTTTATGAATATTGTCCCTTTACTTGTGTTTATTACGTTACCATGTATTATAAGTTTAGGGAGAACCATCCAGACTCGAATGTTTATGCCTTTCTTGACAACATTATAAGCTCTGGGAACGTTATTAGGGACAACGGGGATGAGAATCCTGAAACTCAATACTCTTTTAAGAATCTTGAAAGTTTCAAAATTGAAGAAGCACCAAAGATTGAGTCTGAGTGTTCGATATGTCTTGGGGAGCTTTCAATTGGGTCACTAGCAATTCATTTACCTAATCCGTGTTCTCATGTTTATCATCAAGATTGCATCATTAAGTGGATCAACATATCTAACACATGTCCCTTGTGTCGTAAGCGTATCTAA 480 0.3792 MPLPRRVTRDQGGQPGRTLTEDERITLRNFSMRWNAHINVYEYCPFTCVYYVTMYYKFRENHPDSNVYAFLDNIISSGNVIRDNGDENPETQYSFKNLESFKIEEAPKIESECSICLGELSIGSLAIHLPNPCSHVYHQDCIIKWINISNTCPLCRKRI* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00446 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 157 - -
Rops10g00446 159 SMART ring_2 113 155 IPR001841 -
Rops10g00446 159 Pfam Ring finger domain 112 156 IPR001841 -
Rops10g00446 159 SUPERFAMILY RING/U-box 99 159 - -
Rops10g00446 159 ProSiteProfiles Zinc finger RING-type profile. 113 156 IPR001841 -
Rops10g00446 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 159 IPR013083 -
Rops10g00446 159 SMART ringv_2 112 156 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00446 Rops-Chr10 12094167 12094646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00446 51 159 C3H Transcription Factor Family AT3G02340 32.143 1.62e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00446 - K22378 pvu:PHAVU_007G098000g 97.4413