Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00422 ATGGAGTCTATGTGGTTATCTACCATTGGATCTGTTGTCACTTGTCATGGCTCGGCATTCTTACTCCTGTTACTGTTTTCTTGCTCCACATTCACTTCTACAGAAGCCTATGATCCGCTTGATCCAACTGGCAATATAACAATCAAATGGGATGTCATTAGCTGGACTGCTGATGGCTATGTTGCTGTCGTTTCAATGTACAACTTTCAACAGTATCGCCATATTCAGGCCCCTGGATGGACACTAGGATGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAGGCCAAACCACAGAGCAAGGAGACTGTTCAAAGTTCAAAGCAGGCATCCCACATTGTTGTAAGAAGGATCCAACAGTAGTGGATTTACTGCCAGGAACTCCTTACAACCAACAGATTGCAAATTGTTGTAAAGGTGGAGTCTTAAATTCATGGGCTCAGGATCCAAGCAATGCAGTAAGTTCTTTTCAAGTTAGTGTAGGTTCTGCTGGAACAACTAACAAAACGGTTAAATTGCCAAAAAATTTTACCCTCAAAGCACCAGGACCTGGTTATACTTGTGGCCCTGCAAAAATTGTGAGACCAACTCAATTTATTACCAATGACAAGAGGAGAACCACCCAAGCCTTGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCTTTCTATAATGACACAATAGTAAACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACAGATCCTGGCAGTTGTGTTAATCCAGATTCCCCACATTTGGCTTCAGTTATATCATCATCATCAAGCAAAGATATAAATAAACCTCTAGTCCAGTGTACTAGCCACATGTGTCCTATTCGAGTGCATTGGCATGTGAAGGTCAATTATAAAGAATACTGGAGGATCAAAGTCACAATCACAAACTTCAATTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAACACCCCAATTTTGATAATCTTACTGAGCTTTTCAGCTTTCGGTACAAGCCACTAACACCCTATGAGGGATTAAATGATACAGGTATGTTGTGGGGTGTCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGACCTCTTGGTAATGTGCAATCAGAAATCTTATTTAGGAAGGATAAATCAACCTTCACATTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTATTTCAATGGTGATAACTGTGTTATGCCTCCTCCAGATGCATACCCTTGGCTGCCTAATGCAAGTTCAAAACTAGTTTTCTCTTTACTAAGTACAGTCATGGCCACTCTAGCTTCTTTGTTAATCTTATTGAATGGATCATAG 1371 0.4099 MESMWLSTIGSVVTCHGSAFLLLLLFSCSTFTSTEAYDPLDPTGNITIKWDVISWTADGYVAVVSMYNFQQYRHIQAPGWTLGWTWAKKEVIWNMMGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWAQDPSNAVSSFQVSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVRPTQFITNDKRRTTQALMTWNITCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCTCGCQNKTDPGSCVNPDSPHLASVISSSSSKDINKPLVQCTSHMCPIRVHWHVKVNYKEYWRIKVTITNFNYRMNYSQWNLVVQHPNFDNLTELFSFRYKPLTPYEGLNDTGMLWGVKFYNDFLSSAGPLGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVMATLASLLILLNGS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00422 456 PANTHER PROTEIN COBRA 25 444 IPR006918 GO:0010215|GO:0016020
Rops10g00422 456 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0016020
Rops10g00422 456 PIRSF COBRA 8 455 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00422 Rops-Chr10 11639316 11642756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00422 22 456 COBRA Gene Family AT3G02210 74.713 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00422 - - gmx:100815779 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00422 10 11639316 11642756 Rops10g00422 10 11639316 11642756 ECH
Rops2g03798 2 70081342 70085403 Rops10g00422 10 11639316 11642756 PCT