Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00421 ATGGAATTTGATAATGGTAAACAGAAGCAAAGCTGCAAATTTCATGAGCTGAAGTTGGTTGCCTTAATTGCTCTATGTCTCATTCTAATTTCTCCTGCTGAGGCATTTGATCCATTGGATCCAACTGGGAACGTGACAATAAGATGGGATATCATGTCCTGGACATCAGATGGTTATATGGCCACTGTGACATTATTTAACTTTCAACTGTACCGGAATATTATGAACCCTGGTTGGACTATAGGATGGACATGGGCAAAGAAAGAAATTATATGGGCCATGATGGGAGCTCAAGCTACAGAACAAGGAGATTGTTCCAGTTCCAAGTTCAAGTTAAAGATTCCTCATAGCTGCAAAAGGAACCCTCAAGTGGTTGACTTGCTACCAGGAGCTCCTTTCAACATGCAATACACAAACTGTTGCAAAGGGGGTGTGCTAACATCTTGGGGGCAAGACCCTTCAGGTGCAGTCTCAGCATTTCAGCTGGGTGTGGGGCTCTCTGGCACATCTAACAAAACTGTGAAACTGCCCAAGAACTTCAAATTAATGGGACCAGGACCTGGATATTCATGTGGCCCTGCAAAGCTTGTTCCAGCCACTGTCATTCCCACAGATGATCGTAGGAGAAAAACTCAAGCATTGATGTCCTGGAATGTGACATGTACTTATTCACAGTTTCTTGCCTCCAAGAACCCAAGTTGTTGTGTTTCTTTGTCATCTTTCTACGATGATAAGGTCACAGCTTGTCCAACTTGTGCTTGTGGTTGTCAGAATAATGATACCTGCGTCACGAAAGATTCAAAGATCCTGCAAGAGAATGTAACAAGTACTCGGAAGACAGATATCACACCAAAACCATTGTTACAATGCACACACCACTTGTGTCATGTCCGGGTGCACTGGCATGTGAAAGACAATTATAAGGACTATTGGAGGGTCAAGATTGCCATCGTCAACTTCAACTATCGATTGAATTACACACAATGGTCTCTTGTTATACAACATCCCAATCTCAATAATGTCACACAAGTCTATAGCTTTGAATATATGCCACTTCTTCCCTATGAATCCATAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTATTGATGGAAGCTGGGCCTAAAGGGAATGTGCAATCTGAGGTGCTTATGAAGAAGGACAAGAACACATTTACACTCAAGCAAGGATGGGCATTTCCTAGGAGGGTGTACTTCAATGGTGATGAATGTATGCTGCCACCTCCTGATTTATACCCTTTCTTGCCAAACTCTGCTCATAGACTACCAACAAGTTTTATATTGATGGCAGCCTATGTGATTTTTACATCATTTTTGCATTTGGTTGTGACTCTCTTGTGA 1374 0.4185 MEFDNGKQKQSCKFHELKLVALIALCLILISPAEAFDPLDPTGNVTIRWDIMSWTSDGYMATVTLFNFQLYRNIMNPGWTIGWTWAKKEIIWAMMGAQATEQGDCSSSKFKLKIPHSCKRNPQVVDLLPGAPFNMQYTNCCKGGVLTSWGQDPSGAVSAFQLGVGLSGTSNKTVKLPKNFKLMGPGPGYSCGPAKLVPATVIPTDDRRRKTQALMSWNVTCTYSQFLASKNPSCCVSLSSFYDDKVTACPTCACGCQNNDTCVTKDSKILQENVTSTRKTDITPKPLLQCTHHLCHVRVHWHVKDNYKDYWRVKIAIVNFNYRLNYTQWSLVIQHPNLNNVTQVYSFEYMPLLPYESINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDLYPFLPNSAHRLPTSFILMAAYVIFTSFLHLVVTLL* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00421 457 PANTHER PROTEIN COBRA 24 443 IPR006918 GO:0010215|GO:0016020
Rops10g00421 457 PIRSF COBRA 8 456 IPR006918 GO:0010215|GO:0016020
Rops10g00421 457 Pfam COBRA-like protein 59 224 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00421 Rops-Chr10 11635447 11639226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00421 11 451 COBRA Gene Family AT3G02210 58.108 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00421 - - gmx:100813134 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00421 10 11635447 11639226 Rops10g00421 10 11635447 11639226 ECH