Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00419 ATGGAATCTTGGAGTTATGTTCCTGAAGATAAAGGGTATGTCTCAAATGATGCACTTTCACCTCCCAACACTCTTGGGAGAAGTAAAGGTTCCTTCTTTGGTTGGGAACTGAAAACCCCATCTAGTTTTTCCAATGACATGTTGGCCTTGGGTCATCAAAACATTAAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGGGATGTTGGGGAAACAATTGTCTGATGATCCTATTGGTACTGTTCAGAGCAGAAAACTTGATAGTGGTGCTGATTGCAGAGTTACTAGTCATGTTATGGCTGCCCCAAATGTATTTTCTTCAAGAGAGGACCTCAATTCCAAGCTTGCAAACTCTATTGGAGACTCTAATTGTTGCAATTCACTTATTGATTTGAAGCTGGGTAGATTTGCTGATCATGGAGATCCCATGGGTCCAACATTCTCCAAGGGAGCCCCCATTTTGTCTTCATCTGAGTCCTCAACACCACCCAAGAGGGTGAGAGCTTCAGGGGTACACTCTCAGACTGCCTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGCTTGCAAAGATTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAATGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTCGAAGAAAGCCTCAAGTGGGTATTCACTCAGCAAAAAGTGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCAGGGGACCATGCTAACATCAGCATCTTTTATCTGCCAAGAGATTCTCCCAAGTGGGGTCTTGTCTTCTGAGAAATATGGAACAAGTGGGTGGTGGTGGAGACCTACAAAAGCTGAAGACGGCACTGGTTTTAGACCTCTTTCTTCTATTCCAATTAGCAATGGAGATTCTCAACCAAGATCTCTATTTCCTTCATATAGCGAAAAACAATTTCCTTTTCTTCATGAAAATGGTGCTACATCTGCTACAGGAAGCATCTTTTGTGAAAACAATAGTCAATATCCGCCTGCCCTTGGGGGTTCCAATTCTGGGTCACAATCATTATTCCAAGACACCTCCTTAGGAAGTGAAGAGTTCAATGTTTACGATACAGAATCAACCGTTCAAGGATTATCGGGAATTTCAGATTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGCCAGTCATCAGGAATTCCCATTGCTCGCCGCTTGGTTATTCCAAGCAGCCATAACCATTACAGCATGAGTCAGGTTTCTGAAAAGATGATACGAATAAGTTCACAGGCTTCAAGTGGAGTGTCACACGGTTTTCCATCTGGATTGAATCCTGCAGATGGAAGTCATCTTAGTCCTATATTGATGTCAGATAATAATGAAATTGTCAATTTTGAAATGGCGGATGGAATTTTCCAAGGGTCAGAATTTGTGAATGTGAAAGATCGTCTTTCCTGTGAAGGTGGCCTTACCATTGACTTGCTTCAACTGTCATCACAACTTCAGCGAGTTGAGCATCAGAGGCAAACCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGTTCTCTCCGGATTACTTAA 1674 0.4277 MESWSYVPEDKGYVSNDALSPPNTLGRSKGSFFGWELKTPSSFSNDMLALGHQNIKNQGFEELGFPGMLGKQLSDDPIGTVQSRKLDSGADCRVTSHVMAAPNVFSSREDLNSKLANSIGDSNCCNSLIDLKLGRFADHGDPMGPTFSKGAPILSSSESSTPPKRVRASGVHSQTAYCQVYGCNKDLSACKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSAKSGRLLQPYGDSRFQGTMLTSASFICQEILPSGVLSSEKYGTSGWWWRPTKAEDGTGFRPLSSIPISNGDSQPRSLFPSYSEKQFPFLHENGATSATGSIFCENNSQYPPALGGSNSGSQSLFQDTSLGSEEFNVYDTESTVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPIARRLVIPSSHNHYSMSQVSEKMIRISSQASSGVSHGFPSGLNPADGSHLSPILMSDNNEIVNFEMADGIFQGSEFVNVKDRLSCEGGLTIDLLQLSSQLQRVEHQRQTLQVKQENDSSCSLRIT* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00419 557 Pfam SBP domain 178 251 IPR004333 GO:0003677
Rops10g00419 557 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Rops10g00419 557 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Rops10g00419 557 Gene3D - 168 239 IPR036893 GO:0003677|GO:0005634
Rops10g00419 557 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 542 IPR044817 GO:0003677
Rops10g00419 557 Coils Coil 525 545 - -
Rops10g00419 557 MobiDBLite consensus disorder prediction 150 168 - -
Rops10g00419 557 FunFam Squamosa promoter-binding-like protein 14 169 239 - -
Rops10g00419 557 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00419 Rops-Chr10 11597191 11603208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00419 129 294 SBP-box Gene Family AT1G69170 54.819 5.59e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops10g00419 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00419 - - gmx:100777766 882.863