Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00418 ATGGAGGATGGGGTTGCTCCGACGTTGTTGTCTCCATGGGTGGTGGTTGTGTTGTTATTCTTCTCCAACAAAGGCAAGCTCTTTGAGTATTCAAGTGACCCCTGTATGGAAAGAATACTTGAACGGTATGAGAGGTATTCATATGCGGAGAGGCAGCTTGTTGCAAATGATCAACCACAAAATGAAAATTGGATTCTAGAACACGCAAAGCTCAAAGCAAGGTTGGAAGTCCTGCAGAGAAATCAAAGGAATTTTATGGGAGAAGAACTTGATGGCCTAAGTATCAAAGAGCTTCAGAATTTGGAACATCAGCTTGATTCTGCTCTCAAACACATTAGATCACGAAAGAACCAAGTCATGTATGAATCCATTTCAGCGCTCAATAAAAAGGATAAGGCCCTCCAGGAACAAAACAACTTGCTTGCTAAGAAGATAAAGGAGAATGAGAAGGCACTGGCCCAACAGGCACAACTAGAGCAGCACAGTGATGATATGGATTTAGCCTCCTCTGTCCTTGTACCTCAACCATTAGAGCCATTGAATATTGGAGGCTCTCCACAAGGCAGAGGTGATAGAGGAGATAATGAAGGAACCTCAACTCAAACTCAAGTTAATGCCCTTCTTCCACCTTGGATGCTTCGTCCTCTAAATGAATAG 657 0.4307 MEDGVAPTLLSPWVVVVLLFFSNKGKLFEYSSDPCMERILERYERYSYAERQLVANDQPQNENWILEHAKLKARLEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQVMYESISALNKKDKALQEQNNLLAKKIKENEKALAQQAQLEQHSDDMDLASSVLVPQPLEPLNIGGSPQGRGDRGDNEGTSTQTQVNALLPPWMLRPLNE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00418 218 Pfam K-box region 56 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops10g00418 218 SUPERFAMILY SRF-like 16 65 IPR036879 GO:0003677|GO:0046983
Rops10g00418 218 Coils Coil 134 161 - -
Rops10g00418 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 150 - -
Rops10g00418 218 Coils Coil 61 81 - -
Rops10g00418 218 MobiDBLite consensus disorder prediction 192 207 - -
Rops10g00418 218 MobiDBLite consensus disorder prediction 176 218 - -
Rops10g00418 218 Coils Coil 98 118 - -
Rops10g00418 218 ProSiteProfiles K-box domain profile. 61 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00418 Rops-Chr10 11500603 11519963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00418 36 215 MADS-box Gene Family AT5G60910 62.295 1.16e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00418 K09264 - gmx:100816836 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00418 10 11500603 11519963 Rops10g00418 10 11500603 11519963 ECH