Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00406 ATGAAAGTCCGGTCGGTGAAACTGAGGGAGGCCCACTCCCACAAGGGTGGTCGACCTTCCTCCTGCTCCGTCGTGTGGGACCAGCAAGCACAGCATCTCATCACCGCTTCCTCTTCCGATGTGTCTGTCTCCATTCACGACCCTCTTCTCCCTTCTGCCACTCCCAGGATCCTCCGTCACCACCGTGACGGCGTCACCGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTTGCTACCGGATCCGTTGATCACTCCGTTAAGCTCTACAAGTTTCCCAGTGGAGAGTTTGAGACAAATATTACGAGGTTCACACTTCCAATACGTTCCCTAGCATTTAATAAGTCAGGGAGCATGTTAGCAGCGGCTGGTGATGATGAGGGTATCAAGCTTATAAACACAGTTGATGGTTCCATTGCAAGGGTTCTCAAAGGGCATAAAGGGCCAGTCACAGGCTTAGCTTTCGACCCAAATGGTGAATATTTAGCATCTCTGGATTCAACTGGGACTGTTATTATCTGGGAACTCCACTCTGGGAGAATCCTTCACAACCTCAAAGGCATAGCTCCTGACAATGGGGTAGATGTTTCAACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTGGCAGTTCCTGGGTTAAGAAATGATGTAGTAATGTATGATAGGGACACTGCTGAAAAGTTGTTTTCTCTTAGAGGGGATCACACACAACCTATATGTTACTTGTGTTGGTCACCCAATGGTAAGTACATGGCTACCTCTGGTTTAGACAAGCAGCTTCTGATTTGGGATGTTAATAGGAAACAGGACATTGATAGACAGAAGTTTGATGAAAGAGTGTGTTGCATGGCTTGGAAGCCAATTGGGAATGCCTTGGCTGTTATTGATGTTATGGGGAAGTATGGTATTTGGGATAATGTTATTCCTTCATCTATGAAGTCTCCAACTGAGGATATACCTATGCAGTACAAGAAAAGCAATGGGCTTCTTTTGTTTGATGAGGAGGATCCAGAAAATAGTGCAAGTGGGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTCTGAGCCACCTAGTAGGAAAAGATTGCGTAAACAGTCTTTGATTGAGGAAAATTTAGATGAGGATGGAGGTGATGAAATGGATTTGTATCCCAAGGTTGAGTCTCACAAAAAACGAAATCGCTCCCACAAGGAAAGTTTGGATAATGGGAATGTGGAATTTAGAAGCATGATGGTAACATCTAAGCCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGTAAAAGGCGCTTCTTATGCTACAATATGCTTGGATGTATAACCACTGTTGAACTTGATGGGTACTCTCATATCGAGATTGATTTTCATGATACTGGAAGTGGTCCACGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCATTAAATGAGAATGGAAGCGTCTTTGCAAATCCTTGCATGGGGGAGAAGAGCATGAGCACCCTCATGTATCGTCCATTCAGTAGCTGGGCTAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTGCTGGTTGGGTGGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTCACAGAGGGTGGTTTACAGAGACATATTATTTCGCTAAATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGATAAGCTTGCAGTTGTCACACATGCTTCTGAATGCCTTTCTTCAAATGATCAGGTGTTAGAGTTTAGATTATTTAATATACCTCAAGGGACCTTACCCCTTCGAGGTTGCTTGCCATTAACTCCCGGTTCATCTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCGTACGATTCCAAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGCACCCAGTCTTCAGTGCTATTAAAGAGAAGAAGACAGATGAAAACTATTGGGTGGCGGGGTTGAATGCAAGCAAGTTATTTTGTGTTGTATGCAAAAAGCCTGATACCTTCCCACAGGTGATGCCTAAACCAGTTCTCAATGTATTGAATCTTTCGTTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCCCATGAAAATGAGTTTATAATGAACAGTATGCATCTCTTTGAGATTTACAAAAGAATGGAAGAAATGGCTAATGCTGGTTTGGATGCTAGTGCACTTGATGATGATGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTTAGGCTTATATCTTCCTGCTGCAACAGTGATAAGCTTGGGCGAGCTACTGAACTTATGAAGCTTTTGTCACTGGAAAAATATATGAAAGCTGCAATAAAACTTGTTACTACTCTAAAGCTTCCAAACTTGGCAGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTATGTAATGAAATGAAAAAAACTACGGAAACCAACCTCAAAGAAAACTGTCTTGCACCCAATTCAGCTGATACTCTACTTAGTGGAAGCAAGGCCTCAACTCAAGCTGAAACATCAAAAGCAGTTACTATGTCATCATCACCAAAATTATCTGCTCCTTTATTCACAAAGAAAGACAAAACACAAGAGAGGGCTAAAGCTGGATTACATAAAACTGCAATGGTGAATGAAAATGTGAAGGTAAAGCAGACTGTGGATGAAACAAGTGACCAGGGGGAGAAGGTGGGGGATATGCGTCAGGTGCAAGCTCCTCATTCACATGATCCCTCTATAAAGTCCTCTAATAAGCATGGAGTTAACAAGCCAGAGGCTAGTTTGGCACAACCAAGTAGGCCATCCAATCCATTTTTGAAGTCTTCTATCAAGTGA 2883 0.4336 MKVRSVKLREAHSHKGGRPSSCSVVWDQQAQHLITASSSDVSVSIHDPLLPSATPRILRHHRDGVTALALSPNSTCLATGSVDHSVKLYKFPSGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGLAFDPNGEYLASLDSTGTVIIWELHSGRILHNLKGIAPDNGVDVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQPICYLCWSPNGKYMATSGLDKQLLIWDVNRKQDIDRQKFDERVCCMAWKPIGNALAVIDVMGKYGIWDNVIPSSMKSPTEDIPMQYKKSNGLLLFDEEDPENSASGSLSDLGENSNGESEPPSRKRLRKQSLIEENLDEDGGDEMDLYPKVESHKKRNRSHKESLDNGNVEFRSMMVTSKPKMQEAFQPGSTPVQPGKRRFLCYNMLGCITTVELDGYSHIEIDFHDTGSGPRVPSMTDHFGFTMAALNENGSVFANPCMGEKSMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGAGWVAAVTSFNYLRIFTEGGLQRHIISLNGPVVTASGFKDKLAVVTHASECLSSNDQVLEFRLFNIPQGTLPLRGCLPLTPGSSLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWHPVFSAIKEKKTDENYWVAGLNASKLFCVVCKKPDTFPQVMPKPVLNVLNLSFPLASSDLGSEAHENEFIMNSMHLFEIYKRMEEMANAGLDASALDDDAFNLEAAQDRCILRLISSCCNSDKLGRATELMKLLSLEKYMKAAIKLVTTLKLPNLAERFSSILEERLCNEMKKTTETNLKENCLAPNSADTLLSGSKASTQAETSKAVTMSSSPKLSAPLFTKKDKTQERAKAGLHKTAMVNENVKVKQTVDETSDQGEKVGDMRQVQAPHSHDPSIKSSNKHGVNKPEASLAQPSRPSNPFLKSSIK* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00406 960 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 4 47 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 93 132 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 269 307 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 135 174 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 51 90 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 177 223 IPR001680 GO:0005515
Rops10g00406 960 SMART WD40_4 226 266 IPR001680 GO:0005515
Rops10g00406 960 Gene3D - 2 194 IPR015943 GO:0005515
Rops10g00406 960 Gene3D - 195 308 IPR015943 GO:0005515
Rops10g00406 960 Pfam Minichromosome loss protein, Mcl1, middle region 425 707 IPR022100 -
Rops10g00406 960 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Rops10g00406 960 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Rops10g00406 960 CDD WD40 22 310 - -
Rops10g00406 960 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Rops10g00406 960 Pfam Anaphase-promoting complex subunit 4 WD40 domain 203 288 IPR024977 -
Rops10g00406 960 MobiDBLite consensus disorder prediction 341 357 - -
Rops10g00406 960 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 95 - -
Rops10g00406 960 MobiDBLite consensus disorder prediction 846 960 - -
Rops10g00406 960 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 954 - -
Rops10g00406 960 MobiDBLite consensus disorder prediction 846 870 - -
Rops10g00406 960 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Rops10g00406 960 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Rops10g00406 960 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g00406 960 MobiDBLite consensus disorder prediction 336 407 - -
Rops10g00406 960 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Rops10g00406 960 MobiDBLite consensus disorder prediction 382 407 - -
Rops10g00406 960 MobiDBLite consensus disorder prediction 358 375 - -
Rops10g00406 960 MobiDBLite consensus disorder prediction 924 960 - -
Rops10g00406 960 SUPERFAMILY WD40 repeat-like 22 307 IPR036322 GO:0005515
Rops10g00406 960 MobiDBLite consensus disorder prediction 1 16 - -
Rops10g00406 960 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Rops10g00406 960 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00406 59 269 U-box Gene Family AT2G33340 23.364 1.13e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00406 K11274 - gmx:100818807 1515.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00406 10 11264824 11270046 Rops10g00406 10 11264824 11270046 ECH