Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00393 ATGGAAAGCCTGGAGATCTCAGAACTCCCACCTAAATCTCAAAACCCACACATGAATATGTCACTTGAAACAGATAAATCCTATGACAAGAGAGAAAAGGGTGTCATGAAGATTCTGAAAAGAGCAAACACTAGTGAGAGAAAGTTTCTTGGGGTGAGAAAAAGGCCATCAGGAAGATGGGTTGCTGAGATCAAGGACTCCTCACAGAAACTGAGGCTATGGTTAGGAACTTTTGACAGCGCAGAAGAGGCTGCCATGGCTTATGACTGTGCTGCAAGGCTCCTTAGAGGTAGAAATGCCAAGACAAACTTTCCAATCCCTGCAGGAACCATGAACACACGTGGAGAAAACTTGAGTTTCTTGGGAAAGAATCCAAGGGCTTACCAACTTCTTAAGCATGCAGTCATGAAGAACCATACAGCTTCCTCATCCACAATCATGCCATGGAAAAATCAGATCATGAGAGGTGATTTTGATACCCTTGTTGAGGAAACTATAGTTTGCTCCTCCTCCAGTTCTGAAGAAGGTTCAAGTTTCTGTGGTCTTTCATTTGGAAGTTGTAAGGTTTATTCTTCTATTGTTGTTGCTCCTTCTTTCAGTGCTTCTCCTTGTCAAACAGGATAA 624 0.4263 MESLEISELPPKSQNPHMNMSLETDKSYDKREKGVMKILKRANTSERKFLGVRKRPSGRWVAEIKDSSQKLRLWLGTFDSAEEAAMAYDCAARLLRGRNAKTNFPIPAGTMNTRGENLSFLGKNPRAYQLLKHAVMKNHTASSSTIMPWKNQIMRGDFDTLVEETIVCSSSSSEEGSSFCGLSFGSCKVYSSIVVAPSFSASPCQTG* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00393 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 145 - -
Rops10g00393 207 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Rops10g00393 207 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g00393 207 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Rops10g00393 207 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Rops10g00393 207 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Rops10g00393 207 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Rops10g00393 207 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Rops10g00393 207 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
Rops10g00393 207 MobiDBLite consensus disorder prediction 8 22 - -
Rops10g00393 207 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Rops10g00393 207 Gene3D AP2/ERF domain 47 107 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00393 Rops-Chr10 10815505 10816357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00393 46 123 AP2-EREBP Transcription Factor Family AT5G44210 60.000 4.35e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g00393 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00393 - K09286 gmx:100807374 256.529