Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00390 ATGGAGCCCATGGATATTGTTGCAAAAGCAAAGGAAGATGCTTCGCTTCCTAAAGCCACTATGACGAAAATTATTAAAGAGATGTTGCCACCAGATGTGCGTGTCGCGAGAGATACTCAGGATTTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTCTCATCGGAGTCGAATGAAGTCTGTGGCAGAGAGGAAAGGAGGACAATTGCACCTGAGCATGTATTGAAGGCCTTAGGGGTTCTTGGATTTGGCGAGTACGTTGGGGAAGTTTATGCAGCATATGAACAGCACAAGCAGGAGACAATGCATGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACCGAGGAAGAAGCATTAGCTGAGCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGAATGAATGGAGGGGCTATTACTTCGAAGCAGCCAGATGCTGACCAAGGTTTAGAGAGCTAA 471 0.4586 MEPMDIVAKAKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCGREERRTIAPEHVLKALGVLGFGEYVGEVYAAYEQHKQETMHDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQGLES* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00390 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Rops10g00390 156 Coils Coil 115 135 - -
Rops10g00390 156 FunFam Negative cofactor 2 beta 6 143 - -
Rops10g00390 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Rops10g00390 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Rops10g00390 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00390 Rops-Chr10 10744192 10747678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00390 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 77.922 3.08e-87 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops10g00390 CBFD_NFYB_HMF 8.5e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00390 K21751 - gmx:547635 287.345