Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g00387 | ATGGCGGAAGTTGAACAAAACCATCACACAGAGGAAGATATTAAGAATAAGAAGAAGAAGCTACGCAAGAGGAAAAGAGCCCGTAAGGCTGAGAAGGTAGAACGCGATGAGGAAGAAGAAGAGGATAACGGGAACGCTGAATCTGAGGAGGAGAATCAGGATGAGGGTGAACAACGACAAACTGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAAGAGAAAAAGGTGGAGAACACTGCCTCTGGAATTATGAGCACCGTGTCTTTTTCTTCTCTGGGATTATCTGAACCTACTTCTAAGGCTATTATGGACATGAGTTTTCAACGCATGACTCAGATTCAAGCGAAAGCAATTCCACCGCTTTTGATGGGAAAGGATGTTCTTGGTGCTGCCAGGACAGGTGCTGGAAAAACTCTTGCTTTTTTGATTCCTGCTGTGGAATTGTTGTACAATGTTCAGTTCACACCTCGTAATGGAACTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTGCTCAGGTATCATTCACAAACTCTTGGATTGGTTATTGGGGGTTCAGGAAGAAAGGGAGAAGCTGAGCGCATTGTCAGAGGGGTAAATCTGTTGGTAGCAACCCCTGGTCGTCTTCTAGATCACCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAGTGTCTCACGATTGATGAAGCGGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCTAAGAAAAGGCAAACAGCATTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTTTGTCATTTCAAACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTCGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGGACAACGACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGAGGGCTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAGTTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTAAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAATGTCCAATCTCAACTGGAGAAGTTGGTTGCTGGCATTTATCATTTGAACAATATGGCTAAAGATGCTTATAGGTCATATATATTAGCATACAATGCCCATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCAAACCCACCAAAGGTAAATCTGAACATAGATAGCAGTGCTGCAAAGCATAGGAAGAAAATACGCAAAGTGGAAGGAAGAAGACATTGA | 1665 | 0.418 | MAEVEQNHHTEEDIKNKKKKLRKRKRARKAEKVERDEEEEEDNGNAESEEENQDEGEQRQTEQEEEEEEEEEGEEKKVENTASGIMSTVSFSSLGLSEPTSKAIMDMSFQRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLRYHSQTLGLVIGGSGRKGEAERIVRGVNLLVATPGRLLDHLQNTKGFIYKNLKCLTIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVLVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSAAKHRKKIRKVEGRRH* | 555 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g00387 | 554 | Gene3D | - | 29 | 299 | IPR027417 | - | |
Rops10g00387 | 554 | CDD | DEADc_DDX18 | 100 | 297 | IPR044773 | GO:0003724|GO:0005524 | |
Rops10g00387 | 554 | SMART | DUF4217_3 | 470 | 533 | IPR025313 | - | |
Rops10g00387 | 554 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Rops10g00387 | 554 | Pfam | Domain of unknown function (DUF4217) | 471 | 531 | IPR025313 | - | |
Rops10g00387 | 554 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Rops10g00387 | 554 | Pfam | DEAD/DEAH box helicase | 113 | 284 | IPR011545 | GO:0003676|GO:0005524 | |
Rops10g00387 | 554 | SMART | ultradead3 | 108 | 313 | IPR014001 | - | |
Rops10g00387 | 554 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 325 | 479 | IPR001650 | - | |
Rops10g00387 | 554 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 161 | 451 | IPR027417 | - | |
Rops10g00387 | 554 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 120 | 295 | IPR014001 | - | |
Rops10g00387 | 554 | CDD | SF2_C_DEAD | 310 | 440 | - | - | |
Rops10g00387 | 554 | Gene3D | - | 306 | 549 | IPR027417 | - | |
Rops10g00387 | 554 | MobiDBLite | consensus disorder prediction | 36 | 75 | - | - | |
Rops10g00387 | 554 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 89 | 117 | IPR014014 | GO:0003724 | |
Rops10g00387 | 554 | Coils | Coil | 11 | 81 | - | - | |
Rops10g00387 | 554 | SMART | helicmild6 | 349 | 430 | IPR001650 | - | |
Rops10g00387 | 554 | FunFam | RNA helicase | 306 | 536 | - | - | |
Rops10g00387 | 554 | Pfam | Helicase conserved C-terminal domain | 325 | 429 | IPR001650 | - | |
Rops10g00387 | 554 | PANTHER | RNA HELICASE | 41 | 471 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g00387 | Rops-Chr10 | 10721451 | 10730213 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g00387 | 74 | 448 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.128 | 3.87e-45 | 162 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g00387 | K13179 | - | gmx:100798290 | 907.901 |