Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00387 ATGGCGGAAGTTGAACAAAACCATCACACAGAGGAAGATATTAAGAATAAGAAGAAGAAGCTACGCAAGAGGAAAAGAGCCCGTAAGGCTGAGAAGGTAGAACGCGATGAGGAAGAAGAAGAGGATAACGGGAACGCTGAATCTGAGGAGGAGAATCAGGATGAGGGTGAACAACGACAAACTGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAAGAGAAAAAGGTGGAGAACACTGCCTCTGGAATTATGAGCACCGTGTCTTTTTCTTCTCTGGGATTATCTGAACCTACTTCTAAGGCTATTATGGACATGAGTTTTCAACGCATGACTCAGATTCAAGCGAAAGCAATTCCACCGCTTTTGATGGGAAAGGATGTTCTTGGTGCTGCCAGGACAGGTGCTGGAAAAACTCTTGCTTTTTTGATTCCTGCTGTGGAATTGTTGTACAATGTTCAGTTCACACCTCGTAATGGAACTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTGCTCAGGTATCATTCACAAACTCTTGGATTGGTTATTGGGGGTTCAGGAAGAAAGGGAGAAGCTGAGCGCATTGTCAGAGGGGTAAATCTGTTGGTAGCAACCCCTGGTCGTCTTCTAGATCACCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAGTGTCTCACGATTGATGAAGCGGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCTAAGAAAAGGCAAACAGCATTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTTTGTCATTTCAAACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTCGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGGACAACGACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGAGGGCTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAGTTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTAAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAATGTCCAATCTCAACTGGAGAAGTTGGTTGCTGGCATTTATCATTTGAACAATATGGCTAAAGATGCTTATAGGTCATATATATTAGCATACAATGCCCATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCAAACCCACCAAAGGTAAATCTGAACATAGATAGCAGTGCTGCAAAGCATAGGAAGAAAATACGCAAAGTGGAAGGAAGAAGACATTGA 1665 0.418 MAEVEQNHHTEEDIKNKKKKLRKRKRARKAEKVERDEEEEEDNGNAESEEENQDEGEQRQTEQEEEEEEEEEGEEKKVENTASGIMSTVSFSSLGLSEPTSKAIMDMSFQRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLRYHSQTLGLVIGGSGRKGEAERIVRGVNLLVATPGRLLDHLQNTKGFIYKNLKCLTIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVLVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSAAKHRKKIRKVEGRRH* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00387 554 Gene3D - 29 299 IPR027417 -
Rops10g00387 554 CDD DEADc_DDX18 100 297 IPR044773 GO:0003724|GO:0005524
Rops10g00387 554 SMART DUF4217_3 470 533 IPR025313 -
Rops10g00387 554 MobiDBLite consensus disorder prediction 1 84 - -
Rops10g00387 554 Pfam Domain of unknown function (DUF4217) 471 531 IPR025313 -
Rops10g00387 554 MobiDBLite consensus disorder prediction 1 17 - -
Rops10g00387 554 Pfam DEAD/DEAH box helicase 113 284 IPR011545 GO:0003676|GO:0005524
Rops10g00387 554 SMART ultradead3 108 313 IPR014001 -
Rops10g00387 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 479 IPR001650 -
Rops10g00387 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 451 IPR027417 -
Rops10g00387 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Rops10g00387 554 CDD SF2_C_DEAD 310 440 - -
Rops10g00387 554 Gene3D - 306 549 IPR027417 -
Rops10g00387 554 MobiDBLite consensus disorder prediction 36 75 - -
Rops10g00387 554 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Rops10g00387 554 Coils Coil 11 81 - -
Rops10g00387 554 SMART helicmild6 349 430 IPR001650 -
Rops10g00387 554 FunFam RNA helicase 306 536 - -
Rops10g00387 554 Pfam Helicase conserved C-terminal domain 325 429 IPR001650 -
Rops10g00387 554 PANTHER RNA HELICASE 41 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00387 Rops-Chr10 10721451 10730213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00387 74 448 Eukaryotic Initiation Factors Gene Family AT3G19760 27.128 3.87e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00387 K13179 - gmx:100798290 907.901