Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00371 ATGGCTCCTCCATGGGTTCAAGAGCTCCATCTCCCTCACTTGAGTGTTCCTGTGACCATTGATAAAATGTTTTCGGTTATGCCATCGAGGCCTATTCCAGTGAAACCAGGTGACTCTTTATACCTTTCCAATCTCGATGACATGATTGGAGCACGTGTATTTACACCAACTGTATACTTCTACGGATCAAACAACACGAGTTCTTGCCAAAAAAATGTGATAAAAACACTACTTGGTGCTCTTGCTGATGTTCTGGTGCCTTATTATCCTCTCTCTGGCAGGCTCAGAGAGACCAAGAATGGTAAACTGGAAGTGTTTTTTGGACCAGAACAAGGAGCACTCATGGTTGAGGCAAGGTCTAATATTGCCTTAGCTGAACTAGGAGACCTCACAGCTCCAAACCCAGCTTGGGAACCTTTGATCTTCAAATTCCCCAATGAAGAACCATACAAAGTCCTTGAGATGCCACTGGTCATTGCTCAGGTTACCCTATTCAGCTGTGGTGGCTTTAGCCTTGGTTTGAGGCTCTGCCATTGCATCTGTGATGGTCTAGGAGCCATGCAGTTCCTAGGTACATGGGCTGCCACTGCAAAAACAGGGACGCTGGTTACAGACCCTGAACCTTATTGGGACAGGGAAATGTTTAGCCCTCGTGACCCACCTGTGGTGAAATTTCCACACAAGGAGTTCATGAGAATTGACGAGGGCTCCAACTTGACAATGACACTATGGCAAACCAAGCCTGTTCAAAAGTGTTACAGGATCAACCGTGAGTTCCAAAACTGCTTGAAAGCTCTTGCTCAGCCACTTGATGCTTCAGGTTGCACCACTTTTGATGCCATGGCGGCTCATGTTTGGAGATCATGGGTTAAAGCTCTTGATGTAAGACCACTGGATTATCAACTTAGGTTAACCTTTTCAGTCAATGCTAGGCACAGGCTTAGAAACCCGCCACTGAGAGAAGGGTATTATGGCAATGTGGTATGTGTTGCATGCACAACAAGCACTGTGTCTGAGCTTGTGCATGGACAGCTCCCAGAGACTACACGTTTGGTTCGTGAAGCAAGACAAAGTGTCTCAGAGGAATATTTGAGATCCACAGTGGATTATGTTGATGTGGATAGGCCAAAGCAACTTGAGTTTGGGGGAAAACTAACAATAACTCAATGGACCAGGTTCTCAATATACAAGTGTGCTGATTTTGGGTGGGGTAGGCCTCTGTATGCTGGTCCTATAGATTTAACACCTACTCCTCAAGTTTGTGTATTTCTACCTGAAGGGGAAGCTGATTTTAGTGATTCTATGATAGTGTGCATTTGCTTGCCTGAGTATGCTGCTCAGAAGTTTACACAGGCCTTGTTGCTCGATTCAGTGTTGACACAACAAACCTTGTGCTAA 1398 0.4542 MAPPWVQELHLPHLSVPVTIDKMFSVMPSRPIPVKPGDSLYLSNLDDMIGARVFTPTVYFYGSNNTSSCQKNVIKTLLGALADVLVPYYPLSGRLRETKNGKLEVFFGPEQGALMVEARSNIALAELGDLTAPNPAWEPLIFKFPNEEPYKVLEMPLVIAQVTLFSCGGFSLGLRLCHCICDGLGAMQFLGTWAATAKTGTLVTDPEPYWDREMFSPRDPPVVKFPHKEFMRIDEGSNLTMTLWQTKPVQKCYRINREFQNCLKALAQPLDASGCTTFDAMAAHVWRSWVKALDVRPLDYQLRLTFSVNARHRLRNPPLREGYYGNVVCVACTTSTVSELVHGQLPETTRLVREARQSVSEEYLRSTVDYVDVDRPKQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADFSDSMIVCICLPEYAAQKFTQALLLDSVLTQQTLC* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00371 465 Gene3D - 238 453 IPR023213 -
Rops10g00371 465 Gene3D - 15 232 IPR023213 -
Rops10g00371 465 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 26 443 - -
Rops10g00371 465 Pfam Transferase family 17 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00371 Rops-Chr10 10375212 10376609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00371 30 454 Monolignol Biosynthesis Gene Families AT5G48930 31.350 4.42e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00371 K15400 - gmx:100802814 820.846