Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00368 ATGGCATTGATTCTTCTTCATTCTTGGCGAGACAAGCAAGCCCTCCTCGCTTTCATTTCCCAAACCCCACACGAAAACCGAGTTAACTGGAACGCTTCTGACTCAGCCTGCAACTGGTTCGGTGTCAGATGCGACCCTTCACGTTCCTTCATCCAGTCTCTTCATCTTCCCGCCGTTGGTCTCGTGGGTCCCATCCCTCCAAACACGATCGGTCGCTTAACCCAGTTACGTGTCCTCAGTCTCCGTTCCAATGGCCTCACCGGTGAGATCCCCACCGATTTCTCAAACCTCACGTTACTTCATAACCTCTATCTTCAGAACAACAAATTCTCCGGCGAGTTTCCGACCAGTTTGACACGGATGACTCGGTTGACTCGCCTTGAACTTTCGGATAATAACTTCACTGGTTCTATCCCTTCCTCAATCAACAATTTGACCCACTTGACAGGTCTTTTCTTAGAAAATAACGGTTTCTCTGGTAAACTTCCAAACATTACAGCCAAATTAGTTAACTTCAATGTCTCCAACAACAACCTCAACGGTTCAATTCCAAAGACTCTCTCCAACTTCCCTGAATCGTCATTTGCCGGAAACTTGGATCTTTGTGGAGGACCGTTGAAACCGTGCAACCCGTTTTTCCCATCTCCGGCACCTTCTCCTTCTTCTATTTCACCCCCAATACCGAATAACAAGAAGTCCAAGAAACTTAGCACGGCTGGCATTGTCGGAGTTGTGGTCGGGTCTGTTGTTGCATTGATTTTATTGTTACTTCTTTTGTTATGCTTCTGTAGGCGGGGACGCCGGAAACCAGCGAACCCGCCGCAGAGTGTGGTGGCTGCTGCGCGAGCTGTGCCGGCGGCAGCGAGTGGGACCTCGTCATCAATAGATGATATTACTGGGTCTGCTGAGGCGAAGGAGAGGAACAAACTAGTTTTTGTGGAAGGTGGGGTGTATAGTTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCGGAGGTTTTGGGAAAGGGAAGCATGGGGACTTCTTATAAGGCGGCTTTGGAGGAAGGGACTACTGTGGTGGTGAAGAGGTTGAAGGATGTTGTGGTTACCAAGAAAGAGTTCGAGATGCAAATGGAAGTTGTTGGGAAGATTAAGCATGAGAATGTGGTTCCTCTAAGAGCGTTTTACTACTCCAAAGATGAGAAATTGCTTGTTTACGATTACATGACTACTGGAAGCTTGTCTGCTCTGCTTCACGGGAGCAGAGGTTCTGGGCGAACACCACTAGACTGGGACACCCGAATGAGAATAGCACTAGGAACAGCCAAAGGCCTAGCATTTTTACACGTGTCAGGAAAATTAGTCCACGGCAACATCAAATCTTCCAACGTCCTCCTCCTTCCAAACCACGACCCATGCCTTTCGGACTTCGGACTCAACCCGATTTTCGGAAACTCCGCCCCATCAAACCGGGTCGCGGGTTACCGGGCCCCCGAAATTATCGAAACCCGAAAAACCACATTCAAATCCGACGTGTACAGCTTCGGCGTGCTGGTGCTGGAACTGTTAACAGGAAAAGCACCGAACCAAGCTTCACTGGGCGAAGAGGGTATCGATCTTCCACGTTGGGTGCAATCAGTGGTTCGTGAAGAGTGGACAGCTGAAGTGTTTGATGCTGAACTTATGAGATACCATAACATCGAAGAGGAGATGGTTCAGTTATTGCAGATTGCGATGACGTGTGTTTCACTCGTGCCAGATCAGAGGCCCACCATGCAAGAGGTGTTGCGCATGATTGAGGATATTAACCGCAGCGAAACTGATGAAGGGTTGCGTCAATCGTCTGATGATCCTTCTAAAGGATCAGACGGTCACACACCCCCTCAGGATTCTAGGACTACTCCAAGATCAGATACCTCATAA 1902 0.4874 MALILLHSWRDKQALLAFISQTPHENRVNWNASDSACNWFGVRCDPSRSFIQSLHLPAVGLVGPIPPNTIGRLTQLRVLSLRSNGLTGEIPTDFSNLTLLHNLYLQNNKFSGEFPTSLTRMTRLTRLELSDNNFTGSIPSSINNLTHLTGLFLENNGFSGKLPNITAKLVNFNVSNNNLNGSIPKTLSNFPESSFAGNLDLCGGPLKPCNPFFPSPAPSPSSISPPIPNNKKSKKLSTAGIVGVVVGSVVALILLLLLLLCFCRRGRRKPANPPQSVVAAARAVPAAASGTSSSIDDITGSAEAKERNKLVFVEGGVYSFDLEDLLRASAEVLGKGSMGTSYKAALEEGTTVVVKRLKDVVVTKKEFEMQMEVVGKIKHENVVPLRAFYYSKDEKLLVYDYMTTGSLSALLHGSRGSGRTPLDWDTRMRIALGTAKGLAFLHVSGKLVHGNIKSSNVLLLPNHDPCLSDFGLNPIFGNSAPSNRVAGYRAPEIIETRKTTFKSDVYSFGVLVLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRYHNIEEEMVQLLQIAMTCVSLVPDQRPTMQEVLRMIEDINRSETDEGLRQSSDDPSKGSDGHTPPQDSRTTPRSDTS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00368 633 Pfam Protein kinase domain 330 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00368 633 MobiDBLite consensus disorder prediction 595 633 - -
Rops10g00368 633 MobiDBLite consensus disorder prediction 613 633 - -
Rops10g00368 633 ProSiteProfiles Protein kinase domain profile. 327 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00368 633 Gene3D Transferase(Phosphotransferase) domain 1 402 615 - -
Rops10g00368 633 Pfam Leucine rich repeat N-terminal domain 11 45 IPR013210 -
Rops10g00368 633 Gene3D Ribonuclease Inhibitor 169 209 IPR032675 -
Rops10g00368 633 PANTHER OS05G0588300 PROTEIN 3 605 - -
Rops10g00368 633 Gene3D Phosphorylase Kinase; domain 1 294 401 - -
Rops10g00368 633 Gene3D Ribonuclease Inhibitor 9 167 IPR032675 -
Rops10g00368 633 FunFam pollen receptor-like kinase 1 297 401 - -
Rops10g00368 633 SUPERFAMILY Protein kinase-like (PK-like) 331 592 IPR011009 -
Rops10g00368 633 SUPERFAMILY L domain-like 15 193 - -
Rops10g00368 633 CDD STKc_IRAK 333 595 - -
Rops10g00368 633 MobiDBLite consensus disorder prediction 595 612 - -
Rops10g00368 633 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 606 - -
Rops10g00368 633 FunFam Probable inactive receptor kinase RLK902 8 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00368 Rops-Chr10 10291419 10295061 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00368 11 616 Receptor kinase-like Gene Family AT5G58300 53.171 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops10g00368 Pkinase 5.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00368 - - gmx:100806857 902.508