Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00365 ATGGCATTGATTCTTCTTCATTCTTGGCGAGTACTGACTGTTCTCTTTGTTTTTCTTCTTCTGCTACAACTGAGTGGGCGAGTCAACTCGGAGCCAACTCAGGACAAGCAAGCCCTCCTCGCTTTCATTTCCCAAACCCCACACGAAAACCGAGTTAACTGGAACGCTTCTGACTCAGCCTGCAACTGGTTCGGTGTCAGATGCGACCCTTCACGTTCCTTCATCCAGTCTCTTCATCTTCCCGCCGTTGGTCTCGTGGGTCCCATCCCTCCAAACACGATCGGTCGCTTAACCCAGTTACGTGTCCTCAGTCTCCGTTCCAATGGCCTCACCGGTGAGATCCCCACCGATTTCTCAAACCTCACGTTACTTCATAACCTCTATCTTCAGAACAACAAATTCTCCGGCGAGTTTCCGACCAGTTTGACACGGATGACTCGGTTGACTCGCCTTGAACTTTCGGATAATAACTTCACTGGTTCTATCCCTTCCTCAATCAACAATTTGACCCACTTGACAGGTCTTTTCTTAGAAAATAACGGTTTCTCTGGTAAACTTCCAAACATTACAGCCAAATTAGTTAACTTCAATGTCTCCAACAACAACCTCAACGGTTCAATTCCAAAGACTCTCTCCAACTTCCCTGAATCGTCATTTGCCGGAAACTTGGATCTTTGTGGAGGACCGTTGAAACCGTGCAACCCGTTTTTCCCATCTCCGGCACCTTCTCCTTCTTCTATTTCACCCCCAATACCGAATAACAAGAAGTCCAAGAAACTTAGCACGGCTGGCATTGTCGGAGTTGTGGTCGGGTCTGTTGTTGCATTGATTTTATTGTTACTTCTTTTGTTATGCTTCTGTAGGCGGGGACGCCGGAAACCAGCGAACCCGCCGCAGAGTGTGGTGGCTGCTGCGCGAGCTGTGCCGGCGGCAGCGAGTGGGACCTCGTCATCAAAAGATGATATTACTGGGTCTGCTGAGGCGAAGGAGAGGAACAAACTAGTTTTTGTGGAAGGTGGGGTGTATAGTTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCGGAGGTTTTGGGAAAGGGAAGCATGGGGACTTCTTATAAGGCGGCTTTGGAGGAAGGGACTACTGTGGTGGTGAAGAGGTTGAAGGATGTTGTGGTTACCAAGAAAGAGTTCGAGATGCAAATGGAAGTTGTTGGGAAGATTAAGCATGAGAATGTGGTTCCTCTAAGAGCGTTTTACTACTCCAAAGATGAGAAATTGCTTGTTTACGATTACATGACTACTGGAAGCTTGTCTGCTCTGCTTCACGGGAGCAGAGGTTCTGGGCGAACACCACTAGACTGGGACACCCGAATGAGAATAGCACTAGGAACAGCCAAAGGCCTAGCATTTTTACACGTGTCAGGAAAATTAGTCCACGGCAACATCAAATCTTCCAACGTCCTCCTCCTTCCAAACCACGACCCATGCCTTTCGGACTTCGGACTCAACCCGATTTTCGGAAACTCCGCCCCATCAAACCGGGTCGCGGGTTACCGGGCCCCCGAAATTATCGAAACCCGAAAAACCACATTCAAATCCGACGTGTACAGCTTCGGCGTGCTGGTGCTGGAACTGTTAACAGGAAAAGCACCGAACCAAGCTTCACTGGGCGAAGAGGGTATCGATCTTCCACGTTGGGTGCAATCAGTGGTTCGTGAAGAGTGGACAGCTGAAGTGTTTGATGCTGAACTTATGAGATACCATAACATCGAAGAGGAGATGGTTCAGTTATTGCAGATTGCGATGACGTGTGTTTCACTCGTGCCAGATCAGAGGCCCACCATGCAAGAGGTGTTGCGCATGATTGAGGATATTAACCGCAGCGAAACTGATGAAGGGTTGCGTCAATCGTCTGATGATCCTTCTAAAGGATCAGACGGTCACACACCCCCTCAGGATTCTAGGACTACTCCAAGATCAGATACCTCATAA 1974 0.4868 MALILLHSWRVLTVLFVFLLLLQLSGRVNSEPTQDKQALLAFISQTPHENRVNWNASDSACNWFGVRCDPSRSFIQSLHLPAVGLVGPIPPNTIGRLTQLRVLSLRSNGLTGEIPTDFSNLTLLHNLYLQNNKFSGEFPTSLTRMTRLTRLELSDNNFTGSIPSSINNLTHLTGLFLENNGFSGKLPNITAKLVNFNVSNNNLNGSIPKTLSNFPESSFAGNLDLCGGPLKPCNPFFPSPAPSPSSISPPIPNNKKSKKLSTAGIVGVVVGSVVALILLLLLLLCFCRRGRRKPANPPQSVVAAARAVPAAASGTSSSKDDITGSAEAKERNKLVFVEGGVYSFDLEDLLRASAEVLGKGSMGTSYKAALEEGTTVVVKRLKDVVVTKKEFEMQMEVVGKIKHENVVPLRAFYYSKDEKLLVYDYMTTGSLSALLHGSRGSGRTPLDWDTRMRIALGTAKGLAFLHVSGKLVHGNIKSSNVLLLPNHDPCLSDFGLNPIFGNSAPSNRVAGYRAPEIIETRKTTFKSDVYSFGVLVLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRYHNIEEEMVQLLQIAMTCVSLVPDQRPTMQEVLRMIEDINRSETDEGLRQSSDDPSKGSDGHTPPQDSRTTPRSDTS* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00365 657 SUPERFAMILY Protein kinase-like (PK-like) 355 616 IPR011009 -
Rops10g00365 657 MobiDBLite consensus disorder prediction 619 657 - -
Rops10g00365 657 ProSiteProfiles Protein kinase domain profile. 351 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00365 657 MobiDBLite consensus disorder prediction 637 657 - -
Rops10g00365 657 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 426 630 - -
Rops10g00365 657 PANTHER OS05G0588300 PROTEIN 10 629 - -
Rops10g00365 657 FunFam Probable inactive receptor kinase RLK902 32 190 - -
Rops10g00365 657 Gene3D Transferase(Phosphotransferase) domain 1 426 639 - -
Rops10g00365 657 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Rops10g00365 657 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Rops10g00365 657 FunFam pollen receptor-like kinase 1 320 425 - -
Rops10g00365 657 Pfam Protein kinase domain 354 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00365 657 MobiDBLite consensus disorder prediction 619 636 - -
Rops10g00365 657 CDD STKc_IRAK 357 619 - -
Rops10g00365 657 SUPERFAMILY L domain-like 35 217 - -
Rops10g00365 657 Gene3D Phosphorylase Kinase; domain 1 317 425 - -
Rops10g00365 657 Gene3D Ribonuclease Inhibitor 193 233 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00365 Rops-Chr10 10217550 10221660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00365 35 640 Receptor kinase-like Gene Family AT5G58300 53.333 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops10g00365 Pkinase 5.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00365 - - gmx:100806857 926.006