Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00362 ATGGCATCACAAGGAGAACTAAGCATGGATTGCAAGCCCTATAGCTATTCCATGTTGCTGAAATCATTTGCGGATCAAACTGATCAGACCTACAAGCTTGAAGAGTTCCTTTCTCACTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTCCTCAACAACGCTATGGAGGCTTCAAGGCAGCAACTTCGTGCCTTCAGATCAAATCAAGGAACAAGGCCTGTTCTGGAAGAATTCATACCCATAAAGAATTCAAACTCTCAAGAAAGCTCTGAGAAGGCAACAAACATATCTGATATGGCGAATTGGATGACATCTGCTCAACTATGGAGCCAAGCAAGTGAAGGAACCAAACCACAATCCACAATCACATCCACTAAAGAAAATGATATTGGCTTCAGTGTTAGCCCTAAGCTAGCACTAGACAACAAACATAGGAATGGTGGAGCCTTCTTACCATTCTCAAAAGAAAGAAACTCCTGCCAAGGATTACAGGCTCTTCCTGAGTTGGCCCTTGCCTCTTCTGAGAAAGAAATGGAAGAGAAGAAATGTGGAGAGCCAGAGATTGGAAAGTCATGTTCCAAGAGGGAAAATTCAAGCAAAGGAGGGAATAATTGTGGAGTGGTTGCTGATCAAGGAAAAGGTGCTGCTGCAGTTTCATCTGAGGCACAAACAAATTCAACCACAACAACCACCACCACCACCACCAACCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCGGACTTGCACCGCCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTTCAGAAATATAGGCTTCACACTAGAAGACCAAGTCCAAGTCTACAACCAGGAACACCTGCACCCCAGCTTGTAGTCCTAGGAGGAATTTGGGTCCCACCGGAATATGCCGCACATGCAGGCACTCCGGCGATCTATGGCCCACATACTACTTCACATGCACCACCACCACATTACTGTGCGGCCACCACAGTGCCTCAAGAGTTCTACACTGCCGCACCGCCACAGTCTCCGCTGCCTCCACTGCCACACCACCATGCCCTCCACCACCACCTCCACATGTACAAGACGGGGCAACATGCCCAAACCTCTCCAGAATCGGATGCTCTGGGTGGCGGTGACCGGTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGTGGTAGCTGGAAGGGTGAGAGTGGAGAGAATGAAGGAGAGAGGAAAGGGTTGGCTGCACTCAGAGAAAGAGGGGAGGAGAGCATCGGGAGTGAAATCACTCTCAAGTTCTAG 1386 0.482 MASQGELSMDCKPYSYSMLLKSFADQTDQTYKLEEFLSHLEEERLKIDAFKRELPLCMQLLNNAMEASRQQLRAFRSNQGTRPVLEEFIPIKNSNSQESSEKATNISDMANWMTSAQLWSQASEGTKPQSTITSTKENDIGFSVSPKLALDNKHRNGGAFLPFSKERNSCQGLQALPELALASSEKEMEEKKCGEPEIGKSCSKRENSSKGGNNCGVVADQGKGAAAVSSEAQTNSTTTTTTTTTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLQPGTPAPQLVVLGGIWVPPEYAAHAGTPAIYGPHTTSHAPPPHYCAATTVPQEFYTAAPPQSPLPPLPHHHALHHHLHMYKTGQHAQTSPESDALGGGDRSESIEDGKSESGSWKGESGENEGERKGLAALRERGEESIGSEITLKF* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00362 461 MobiDBLite consensus disorder prediction 227 251 - -
Rops10g00362 461 Coils Coil 33 53 - -
Rops10g00362 461 MobiDBLite consensus disorder prediction 394 461 - -
Rops10g00362 461 Pfam Myb-like DNA-binding domain 253 304 IPR001005 -
Rops10g00362 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 308 IPR017930 -
Rops10g00362 461 Gene3D - 250 308 - -
Rops10g00362 461 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 429 IPR044787 GO:0003700|GO:0006355
Rops10g00362 461 SUPERFAMILY Homeodomain-like 248 309 IPR009057 -
Rops10g00362 461 FunFam Myb family transcription factor 250 308 - -
Rops10g00362 461 MobiDBLite consensus disorder prediction 412 455 - -
Rops10g00362 461 MobiDBLite consensus disorder prediction 192 213 - -
Rops10g00362 461 NCBIfam myb-like DNA-binding domain, SHAQKYF class 251 306 IPR006447 GO:0003677
Rops10g00362 461 Coils Coil 58 78 - -
Rops10g00362 461 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00362 Rops-Chr10 10126097 10128724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00362 1 461 G2-like Transcription Factor Family AT2G03500 51.230 3.04e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops10g00362 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00362 - - gmx:100815048 647.121