Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00358 ATGGGATTGTCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTACCTGTAATTGACTTTGTTGCTCAAATTTTGAGAAAAGATGTGCACTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAAAAGGCCTTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTAGAAGGAAGTACAGGATATCAGGATTGACATCACAGCCAACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTGGTTGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTTAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGGGGCCAGAGATATACAAAGGGGCTAAATGAAAAGCAGATAACTTCTCTGCTAAAGTTCTCATGCCAGAGACCCAGAGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACGATTATGAGAATAATCCCTATGCAAAGGAGTTTGGCATTAGCATAGACAACAAGCTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGAAAGTGGAAGAGAGAAAGAACACTTGCCACAAGTGGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACTGTAAAATATTGGGCATGCATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGTCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGTGATGCCTGTATATTCAGCAAGACCAGATCAGGTAAAGAAGGCTTTGAAATATGTACATTCTGCTGCTCTAGACAAACTTGATGGGAAAGAGCTAGAGTTTCTGATCGCCATTCTTCCAGACAATAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAATATGTATTCAAGATTAATAGACAGTACCTGGCAAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCTTTGAGTTGGAGGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGATTCTTGCCCTTCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCTCAGCCACATCGCGAAGAACTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAACGGGGTGTAGTTTATGGTGGTATGATCAGGGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATTTTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTGGTGGTTCAAAAACGGCATCATACTAGACTCTTTACAAACAATCATGATGACAGAAACAGTACTGATAAGAGCGGCAATATCTTACCTGGTACTGTGGTGGATTCTAAGATATGTCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACTAGTAGACCAGCACACTATCATGTCCTCTGGGATGAGAACAACTTCACTGCAGATGAGATTCAGTCTCTAACCAACAACTTATGCTACACTTATGCAAGATGTACTCGGTCTGTTTCTGTAGTGCCTCCAGCATACTATGCTCATTTAGCAGCCTATAGAGCTCGATTCTACATGGAACCTGATGTTACTGAGATTGCAAAACTGCAAGGTGCAAAATCAAAAGATAGGCATGTTCGGCCATTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 1992 0.4056 MGLSLNIDMSSMAFIEPLPVIDFVAQILRKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKFSCQRPREQETDILQTIQQNDYENNPYAKEFGISIDNKLASVEARVLPAPWLKYHESGREKEHLPQVGQWNMMNKKVINGSTVKYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVMPVYSARPDQVKKALKYVHSAALDKLDGKELEFLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKYVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFTNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVTEIAKLQGAKSKDRHVRPLPALKEKVKNVMFYC* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00358 663 SUPERFAMILY PAZ domain 13 172 IPR036085 GO:0005515
Rops10g00358 663 Gene3D paz domain 12 136 - -
Rops10g00358 663 FunFam protein argonaute 10-like 375 663 - -
Rops10g00358 663 Pfam Mid domain of argonaute 215 292 IPR032473 -
Rops10g00358 663 Gene3D - 375 663 IPR036397 GO:0003676
Rops10g00358 663 FunFam Protein argonaute-2 11 137 - -
Rops10g00358 663 CDD PAZ_argonaute_like 17 131 - -
Rops10g00358 663 CDD Piwi_ago-like 176 626 IPR045246 -
Rops10g00358 663 Pfam Piwi domain 307 626 IPR003165 GO:0003676
Rops10g00358 663 Gene3D - 196 369 - -
Rops10g00358 663 SMART PAZ_2_a_3 22 154 IPR003100 GO:0005515
Rops10g00358 663 SUPERFAMILY Ribonuclease H-like 295 628 IPR012337 -
Rops10g00358 663 SMART Piwi_a_2 306 627 IPR003165 GO:0003676
Rops10g00358 663 Pfam PAZ domain 22 148 IPR003100 GO:0005515
Rops10g00358 663 ProSiteProfiles PAZ domain profile. 18 132 IPR003100 GO:0005515
Rops10g00358 663 Pfam Argonaute linker 2 domain 160 204 IPR032472 -
Rops10g00358 663 FunFam Argonaute 10 196 369 - -
Rops10g00358 663 ProSiteProfiles Piwi domain profile. 306 627 IPR003165 GO:0003676
Rops10g00358 663 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00358 Rops-Chr10 10032619 10038429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00358 1 663 Eukaryotic Initiation Factors Gene Family AT5G43810 79.671 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00358 K11593 - gmx:100810235 1283.47