Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00357 ATGGAGATGGTTTCAGCCAGCTCTTCCGGAATAAAGACGAGGGACATCGACGGCCTCCTCGCCGGTGTCGGATACAAAGTCCGGTCATCGGAGCTCCGTCAAGTGGCTCAAAATATTGAAAGATTGGAGAACGCGATTGTGAACTCATCTAGCGACATTTCTCAACTTGCTTCCGACACGGTTCTCTACGACCCCTCCGACATCGGATCCTGGGTGGACACTCTCCTCTCTGAGTTCGACCACAGCGTGTCGTTACCCTACGATCTCTCCAACATACCCGATCTCGCGACGGTTCCTCCACCACAAGAGCAACAACACCACCAACTAATAACCACCGTGGAAGAAGACTCAGGGATTAGGCTCGTCCACATGCTGATGACGTGTGCGGATTCATTGCAACGTGGTGATATCCCATTGGCTGGTACCCTCATAGAAGGTATGCAGGGTTTGTTAGCACACGTCAACACAAACTGCGGTATCGGAAAAGTCGCCGGTTACTTCATCGACGCCTTAAGCCGCCGCATCTTTGCACCGCAGGGGCAAAATTGTCTCTTCCAAGGCTCCACTTATGAGAACGATGTTCTTTATCATCACTACTACGAGGCTTGCCCTTATATAAAGTTTGCTCACTTCACTGCAAATCAGGCTATACTAGAAGCTTTTAACGGCCATGATTGTGTCCACGTCATCGATTTCAACCTCATGCAGGGACTTCAATGGCCGGCGTTAATACAAGCCCTCGCGCTACGTCCTGGTGGGCCCCCCTTGTTAAGGCTCACCGGCATTGGTCCGCCGTCGCCGGACAACCGCGACCAGCTAAGGGAAATCGGGTTGCGACTCGCTGAGTTGGCTCGCTCCGTCAACGTTCGATTCGCTTTCCGTGGCGTCGCGGCGTGGCGGTTAGAGGACGTGAAGCCGTGGATGCTTCAAGTGAGTCCAAGAGAAGCGGTAGCAGTTAACTCAATCATGCAGCTTCACCGTCTTCTTGGGTCAGAATCCGACCCGAGCCAATCAGGTATTGAAACGGTTCTTAATTGGATCCGGAGTTTGAACCCGAAGATTGTAACCGTTGTGGAGCAAGAAGGGAATCATAACGAGGAGGGTTTTTTGGACCGGTTCACTGAAGCGTTGCATTATTACTCGACCGTTTTTGACTCTTTAGAAGCGTGTCCGGTCGAACCGGATAAGGCTTTGGCAGAGATGTATCTTCAGATGGAGATATGCAACGTGGTGTGTTGTGAGGGTTCGGCTCGGGTTGAGAGGCATGAACCATTGGCTAAGTGGAGGGACCGGCTCGGGAAAGCCGGGTTCAGACCGTTACATTTGGGTTCGAACGCGTTCAAGCAAGCCAGCATGTTGTTGACTCTTTTCTCTGCAGAGGGTTATTGTGTTGAAGAGAATCAAGGGTGTTTGACTCTGGGTTGGCATAGCCGTCCTCTCATTGCGGCTTCAGCTTGGCAAGCCGTGAGGGAAACGGTGCGTTTTGAGCACTGA 1494 0.5201 MEMVSASSSGIKTRDIDGLLAGVGYKVRSSELRQVAQNIERLENAIVNSSSDISQLASDTVLYDPSDIGSWVDTLLSEFDHSVSLPYDLSNIPDLATVPPPQEQQHHQLITTVEEDSGIRLVHMLMTCADSLQRGDIPLAGTLIEGMQGLLAHVNTNCGIGKVAGYFIDALSRRIFAPQGQNCLFQGSTYENDVLYHHYYEACPYIKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDNRDQLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSPREAVAVNSIMQLHRLLGSESDPSQSGIETVLNWIRSLNPKIVTVVEQEGNHNEEGFLDRFTEALHYYSTVFDSLEACPVEPDKALAEMYLQMEICNVVCCEGSARVERHEPLAKWRDRLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAVRETVRFEH* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00357 497 FunFam DELLA protein GAI 15 79 - -
Rops10g00357 497 Pfam GRAS domain family 121 487 IPR005202 -
Rops10g00357 497 Pfam Transcriptional regulator DELLA protein N terminal 17 82 IPR021914 -
Rops10g00357 497 ProSiteProfiles GRAS family profile. 112 487 IPR005202 -
Rops10g00357 497 Gene3D - 15 79 IPR038088 -
Rops10g00357 497 Coils Coil 25 59 - -
Rops10g00357 497 SMART DELLA_2 17 89 - -
Rops10g00357 497 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 105 483 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00357 Rops-Chr10 10013024 10014928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00357 16 487 GRAS Transcription Factor Family AT1G14920 48.438 3.62e-162 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops10g00357 GRAS 9.4e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00357 K14494 - gmx:100805968 777.704