Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00353 ATGTGCTGCGTGTTGGAGAGGTTAAAGCCAGCACCATCTCCAACTCTATCTCCTGTTTTGTTAAGCACATCTCAACCCAGAAGCCACATGATGAACCACTTGACCGTTGAGACTGAAGATTCTTTCGCTAGCTTGCTCGAGCTGGCAGCCAATGATGATGTTGAAGGTTTCAAACGAATGATTGAACGAGATCCTTCTTGTGTAGATGAGGAAGGGCATTGGTATAGTCGCAGGAAGGGCTCAAAGCAGATGGTCAATGAGCGCAGAACACCTTTGATGGTAGCTGCTACTTATGGAAGCATCGATGTTATGAAACTGATTCTTTCACTATCTGATTATGATATTAATAAACCCTGTGGCCTTGACAAGAGCACTGCCCTTCATTGTGCGGCCGCGGGTGGAGCTGTAAATGCTGTTGATGTTGTTAAACTTCTTCAAGAAGCGGGGGCTGATCCAATTTTTGTGGATGGCAATGGTCATCGACCAGTTGATGTTATTGTTGTTCCCCCAAAGCTTGAATTTGTCAAAAATAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATTACAGGGTGTAATCTTAGGGTGATCACAGCCCCATCAAACACATATTCTCCACCTTTATCAGCTTCACCAGAGAATGGCTCTCCTTCTGCAGTGGATTTCCATTTGAAGTCAAAGTTAAACGATGTCACTATTTCTTCTACATCAGAGAAGAAGGAATATCCTGTTGATCCATCCCTTCCAGACATCAAGAATAGCATATATTCAACAGATGAATTTCGAATGTATTCTTTCAAGGTTAGACCTTGTTCACGTGCTTACTCTCATGATTGGACTGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGAAGAAGGGACCCTAGAAAGTACCATTACAGTTGTGTTCCGTGTCATGAATTTCGTAAGGGTGCTTGCCGACGTGGTGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGTTGCATCCTGCACAATATCGAACTCGGCTTTGCAAGGATGGGACTAGTTGCTATAGAAGAGTTTGCTTTTTTGCCCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCCACTGGTTCTGCTGTTCCATCTCCTCGTTCAAGCACATCTTCTGCAATGGATTTTGCTGCCGCCATGAGCCTGTTGCCCGGCTCTCCTTCTTCTATGTCTGTCATGTCTCCTTCACCATTCACTCCACCCATGTCACCCTCTGCTAATGGCATGTCACACTCTTCTGTTGCTTGGCCCCAACCAAATGTCCCGGCCTTGCATCTTCCAGGGAGTAATCTTCATTCCAGTCGATTGAGATCTTCGCTCCATGCTAGAGATATTCCTGCAGATGACTTTGACTTGTTGCCTGACCATGAGGTTCAGCAACAACAGCTTCTTAATGAGTTATCTTGCCTCTCTCAACAGCCTATGAATCATTCTGGCCGGATGAAAAATCTGACCCCATCAAATATTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTATGTTTTCTGATCCGACATTGGCGTCGGCTGTTTTTTCTCCAACACACAAATCAGCTTTCCTTAATCAATTTCAGCAGCAGCAAAGGTTGCTGTCACCTGTGAATACAAACTTTTCTCCTAAAAATGTTGACCATCCTTTATTGCAGGCCTCTTTCGGGGTTCAAACATCAGGAAGGATGTCTCCCCGAAATGTCGAACCTATTTCTCCAGTGAGCTCTAGGATTTCTATGCTAGCTCAACATGAGAAGCAACAACAATTTCGTAGCCTTAGCTTCCGGGAACATGGCTCCAGCTCTGCTACTGTTGCTGCTGGGTCCCCTGTCAATTCTTGGTCAAAATGGGGATCCTCCAATGGTGCATTGGATTGGGCTGTCAGTGCAGACGAATTAGGTAAGCAACGCAGATCATCTTCATTTGAGCGTGGAAATAATGGTGAGGAGCCTGATTTGTCATGGGTCCAATCACTTGTTAAAGAATCTCCAACTGAGATTAAGGGGAAGCTACCAACAACCAGCTCGACTATGGCAGCAGCTGGATCCTCCAGTGAGGGATCAAATATGAGTGCGCCGGTGGACTCCGTTGATCATGCTGTGATAGGAGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAGAATTAA 2178 0.4527 MCCVLERLKPAPSPTLSPVLLSTSQPRSHMMNHLTVETEDSFASLLELAANDDVEGFKRMIERDPSCVDEEGHWYSRRKGSKQMVNERRTPLMVAATYGSIDVMKLILSLSDYDINKPCGLDKSTALHCAAAGGAVNAVDVVKLLQEAGADPIFVDGNGHRPVDVIVVPPKLEFVKNSLEELLQTDDSITGCNLRVITAPSNTYSPPLSASPENGSPSAVDFHLKSKLNDVTISSTSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCHEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCYRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLHSSRLRSSLHARDIPADDFDLLPDHEVQQQQLLNELSCLSQQPMNHSGRMKNLTPSNIDDLFSAESSSPMFSDPTLASAVFSPTHKSAFLNQFQQQQRLLSPVNTNFSPKNVDHPLLQASFGVQTSGRMSPRNVEPISPVSSRISMLAQHEKQQQFRSLSFREHGSSSATVAAGSPVNSWSKWGSSNGALDWAVSADELGKQRRSSSFERGNNGEEPDLSWVQSLVKESPTEIKGKLPTTSSTMAAAGSSSEGSNMSAPVDSVDHAVIGAWLEQMQLDHLVAQQN* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00353 725 MobiDBLite consensus disorder prediction 643 698 - -
Rops10g00353 725 SMART ANK_2a 122 154 IPR002110 GO:0005515
Rops10g00353 725 SMART ANK_2a 87 117 IPR002110 GO:0005515
Rops10g00353 725 MobiDBLite consensus disorder prediction 674 698 - -
Rops10g00353 725 SUPERFAMILY Ankyrin repeat 45 180 IPR036770 -
Rops10g00353 725 Gene3D - 21 264 IPR036770 -
Rops10g00353 725 ProSiteProfiles Ankyrin repeat region circular profile. 122 151 - -
Rops10g00353 725 SMART c3hfinal6 300 326 IPR000571 GO:0046872
Rops10g00353 725 Gene3D - 300 363 - -
Rops10g00353 725 ProSiteProfiles Zinc finger C3H1-type profile. 305 327 IPR000571 GO:0046872
Rops10g00353 725 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Rops10g00353 725 Pfam Ankyrin repeats (3 copies) 80 152 IPR002110 GO:0005515
Rops10g00353 725 PANTHER UNKEMPT FAMILY MEMBER 47 669 IPR045234 -
Rops10g00353 725 FunFam Zinc finger CCCH domain-containing protein 66 258 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00353 Rops-Chr10 9904229 9908121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00353 36 718 C2H2 Transcription Factor Family AT5G12850 52.429 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops10g00353 Ank_2 1.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00353 - - ccaj:109796653 1119.38