Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00347 ATGGAAAAGAAAAGAGCTACTGTTCCTCTTGTGTGTCATGGTCACTCTCGTCCCGTGGTTGATCTGTTTTACAGTCCCATTACTCCTGATGGATTCTTCCTTATCAGCGCAAGCAAAGATGCTAATCCTATGCTGAGGAATGGAGAGACAGGAGATTGGATTGGAACTTTTGAAGGGCACAAAGGTGCTGTATGGAGTTGCTGCTTGGATACAAATGCTTTGCGTGCTGCAACTGCTTCTGCGGATTTCTCATCCAAAGTTTGGGATGCGTTAACCGGAGATGAGTTACATTCTTTTGAACATAAGCACATTGTTAGAGCATGTGCTTTTTCTGAGGATACACACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCTGATGCACCACCCAGAGAAGTGGATAAATCCCCTGGTTCTGTCAGGACCATTGCATGGCTTCACAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAACTGGTAAAATGGTCCAGACACTTGAGACCAAGTCATCTATGACTAGTGCTGAAGTGAGCCAGGACGGTCGTTATATTACAACTGCTGACGGTTCTACTGTGAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGACATGCCCTGTGCTGTGGAATCAGCTTCATTGGAGCCCAAGTATGGGAACAAGTTCATTGCTGGGGGAGAAGACATGTGGGTTCGTGTTTTTGATTTCCACACTGGCAATGAGATTGCATGCAACAAGGGTCATCATGGTCCGGTACACTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGGCCATTGACTTGTGATGAATCCGAGGCTTTATCCTCAAATGGATCAGTGGAAAGAGTGAAGGTAACTGCTGAAGAGGTTTCGCACAAAATTGAAGGTTTTCATATTGCAGAGGAGGCCAAGTCCGATGATAAGGAAGAGGCGCTGGAGGAATTATGA 1056 0.4555 MEKKRATVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDANPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSSKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPREVDKSPGSVRTIAWLHSDQTILSSCTDMGGVRLWDVRTGKMVQTLETKSSMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCAVESASLEPKYGNKFIAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTCDESEALSSNGSVERVKVTAEEVSHKIEGFHIAEEAKSDDKEEALEEL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00347 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Rops10g00347 351 SUPERFAMILY WD40 repeat-like 5 305 IPR036322 GO:0005515
Rops10g00347 351 Gene3D - 9 326 IPR015943 GO:0005515
Rops10g00347 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Rops10g00347 351 FunFam Serine-threonine kinase receptor-associated protein 8 322 - -
Rops10g00347 351 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Rops10g00347 351 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Rops10g00347 351 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Rops10g00347 351 CDD WD40 14 298 - -
Rops10g00347 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Rops10g00347 351 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 340 - -
Rops10g00347 351 Coils Coil 334 351 - -
Rops10g00347 351 SMART WD40_4 50 89 IPR001680 GO:0005515
Rops10g00347 351 SMART WD40_4 5 47 IPR001680 GO:0005515
Rops10g00347 351 SMART WD40_4 92 130 IPR001680 GO:0005515
Rops10g00347 351 SMART WD40_4 217 256 IPR001680 GO:0005515
Rops10g00347 351 SMART WD40_4 259 298 IPR001680 GO:0005515
Rops10g00347 351 SMART WD40_4 177 214 IPR001680 GO:0005515
Rops10g00347 351 SMART WD40_4 134 174 IPR001680 GO:0005515
Rops10g00347 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00347 Rops-Chr10 9787463 9791937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00347 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 30.503 9.64e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00347 K13137 - gmx:100818422 655.981