LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g00346	ATGCCAAAAGTGTTATATAGTTCTCCAAAGTTTGAATCCGGCGTGATGCCAGAGGCATTCCGTCATATCATGGTCAACCCCCAGAGTTCGCCGTCCTCCGTCACCAAGAAAGCAAGCTTTACCCTCTCATCTCTCTCACTGAATGATTGGCAGGCTAGGTTGGTAGGCTATATATTGGGCGAGAATGCAACTAGGGCAAGTAGACCCTTTCAACAAGAATTTTGGGCTGAGGCAGTTAACACAACTTGTTTCTTGGTTAATAGATCTTCATCTACAACTATTGAGAATAAAACTCCTTTTGAGGTATGGTCTGGTTCACCTGCTGATTATTCTCAGTTGAGAGTATTTGGTTGCCTTGCTTATGCTCATGTGAATGATGGCAAACTTGAGCCTAAGGCAAAGAAATGCATATTTCTAGGAGGTATTGTTGAGGAGTTAAATATGGAGACAATCCTGGAAGAATCATTTGTTCAATTGAATGATGATGCGGATATGAATGAGGAGTGTCCAACGACAGATTTTGATAATGGGGTACAGAAATATGGTGTTTATAAGAGTGTGACAGAGTTGAATGATGATGACATCTTACATTTAGAGTTTGGCAGTGAAGACGAAGCTATAGAATTTTATAAAATGTATGCAATGTATCATGGATTTGTTGTTAGGAAAGATGATGTGTATGGAGATGTGAAGGGGAAAGTTGTCATGCGGCAATTAGTATGCAATATATCTGGTTTAAGAAACAAGAAACATATTAAAAGGGTGGACAGAATAAGAGACCATAAACCAATCACACGGACGAATTGTGATGCAAAGTTTAGGGTGCATTTTAACTACAGTAGTCTGAAATGGAAGGTTGTCTCTTTTCAGAATTCATATAACCATAAACTTACACCACCGGAACATGTTCACCTACTACCTGCTTATCGTAGGTTGACATTTGCAAATGAAGCTCAAGTCAATAGCTTGCATCATTATGGTGTGAGGTCATGTTATATATTGGGTTTCATGCTAGGCCAGAAAGGTGGATATGCAGATTTAGGATTCTGCAAGAAGGACTTATATAATCATCTTGACAAGTAG	1083	0.3915	MPKVLYSSPKFESGVMPEAFRHIMVNPQSSPSSVTKKASFTLSSLSLNDWQARLVGYILGENATRASRPFQQEFWAEAVNTTCFLVNRSSSTTIENKTPFEVWSGSPADYSQLRVFGCLAYAHVNDGKLEPKAKKCIFLGGIVEELNMETILEESFVQLNDDADMNEECPTTDFDNGVQKYGVYKSVTELNDDDILHLEFGSEDEAIEFYKMYAMYHGFVVRKDDVYGDVKGKVVMRQLVCNISGLRNKKHIKRVDRIRDHKPITRTNCDAKFRVHFNYSSLKWKVVSFQNSYNHKLTPPEHVHLLPAYRRLTFANEAQVNSLHHYGVRSCYILGFMLGQKGGYADLGFCKKDLYNHLDK*	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g00346	360	Pfam	FAR1 DNA-binding domain	208	298	IPR004330	-
	Rops10g00346	360	SUPERFAMILY	Ribonuclease H-like	71	105	IPR012337	-
	Rops10g00346	360	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	158	324	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g00346	Rops-Chr10	9739897	9751503	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Rops10g00346		FAR1	1.3e-16	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g00346	-		-	ccaj:109792835	225.328