Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00340 ATGGATGATAGGAGAAGGATTATAATCACTGCTATATCAGTGATAGCAGTGATAATAATCATAATTGTTGCTCGTGTCTCGTTGAAGCTCTCAAGGGCTTTCTTCCTCATCTGTGGTGCTGGTATTGCTGTGATTCTTGCGATTTTTGCTTATGTATTTGTCAGTTTAAAATACAACCGTAGAAAGAGGATATTGGAGTCACAGTTGCAATCTGAAGGCCAAGAACTTCGAATTGAGTACAGTTTCTTAAGGAAAGTTGCAGGGGTGCCCACCAAGTTCAGATACAATGAGCTTGAGGAAGCAACAGATGGGTTTCAGGCACTGATTGGAAGAGGTTCCTCTGGTTCAGTTTTCAAAGGCATTCTCAATGATGGTACTTCAGTTGCTGTGAAAAGAATTGATGCAGAAGAAAGAGGAGAAAAGGAGTTCAAATCAGAAGTTGCAGCCATAGCTAGTGTGCATCATGTGAGTCTTGTGAGGTTATTGGGATATTGTAATGCTCCTTCAGCACCTAGGTACCTTGTTTATGACTATATCTCAAATGGGTCTTTGGATTGTTGGATTTTTCCCAAGAAGCAAAGTCAAAGGCGTCGTGGTGGGTGTTTGCCATGGAACTTGAGGTATAAAGTTGCAATTGATGTTGCTAAGGGACTTGCTTACCTTCACCATGATTGTAGATCAAGGATCTTACACCTTGATATAAAGCCAGAGAATATTCTTTTGGATGAGAATTATAGAGCTCTTGTTTCAGATTTTGGTCTTTCAAAGCTTATTGGTAAGGATGAAAGCCAAGCTATGTCTACAATAAGAGGAACAAGAGGGTACTTGGCTCCTGAATGGCTCTTAGAGCAAGGTGTTTCAGATAAGACTGATATCTATAGTTATGGGATGGTTCTCTTGGAGATTGTTGGAGGAAGAAAAAACGTGACCTTGGTAGAAGATGAAAAGGGCAAGTCAAAAAAAAAGTGGCGTTACTTTCCAAAGATTGTGAATGAGAAAGTGAGGGAAGGGACATTAATGGAAATTGTTGATCATAGGTTAATGGAATGTGGGGGTGTTGATGAGAGAGAGGTGAAAACATTGGTTTATGTTGCTTTGTGGTGTGTGCAAGAGAGGCCAAAGTTGAGGCCTAGCATGGCACAAGTGGTTGATATGCTTGAAGGGCGTGTGAGGGTTGAAATGCCACCTGATACAAGAATGGTTCTTGTTGATTTGCTATCTGTGGATGAAGATGCAACAGGGGGAGAGATTCCTCAAAAGACGAAGCAACCTGATCAGACAGAACAACCTGACCAGAGAGAACAAAGTCAAGCTGATCAAGTAGATCAAGAACCTCAAATGAGAAGATCAACGAGAGTCAGACAACCATCAAGAAGGTATTTCTCAGATGATTATGTCAATCTCACTGATGAATGGGAACCTCAAGGTTTCATGGAAGCTATTGAGATGAATGATAAAGAGAAGTTAGAAGTCTGTAAAGAAGTTGCAGGCTTAGCATCAACCCCAACTAAGAGCTTCGGAGTTTTTCGGAGTCTCAACACAACCACTAAGCTCTAA 1557 0.4104 MDDRRRIIITAISVIAVIIIIIVARVSLKLSRAFFLICGAGIAVILAIFAYVFVSLKYNRRKRILESQLQSEGQELRIEYSFLRKVAGVPTKFRYNELEEATDGFQALIGRGSSGSVFKGILNDGTSVAVKRIDAEERGEKEFKSEVAAIASVHHVSLVRLLGYCNAPSAPRYLVYDYISNGSLDCWIFPKKQSQRRRGGCLPWNLRYKVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDENYRALVSDFGLSKLIGKDESQAMSTIRGTRGYLAPEWLLEQGVSDKTDIYSYGMVLLEIVGGRKNVTLVEDEKGKSKKKWRYFPKIVNEKVREGTLMEIVDHRLMECGGVDEREVKTLVYVALWCVQERPKLRPSMAQVVDMLEGRVRVEMPPDTRMVLVDLLSVDEDATGGEIPQKTKQPDQTEQPDQREQSQADQVDQEPQMRRSTRVRQPSRRYFSDDYVNLTDEWEPQGFMEAIEMNDKEKLEVCKEVAGLASTPTKSFGVFRSLNTTTKL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00340 518 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
Rops10g00340 518 Gene3D Transferase(Phosphotransferase) domain 1 179 397 - -
Rops10g00340 518 MobiDBLite consensus disorder prediction 419 444 - -
Rops10g00340 518 FunFam Putative receptor-like protein kinase 179 394 - -
Rops10g00340 518 MobiDBLite consensus disorder prediction 412 456 - -
Rops10g00340 518 FunFam Putative receptor-like protein kinase 70 178 - -
Rops10g00340 518 ProSiteProfiles Protein kinase domain profile. 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00340 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Rops10g00340 518 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Rops10g00340 518 SMART serkin_6 103 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00340 518 Pfam Protein kinase domain 108 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00340 518 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Rops10g00340 518 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00340 Rops-Chr10 9635075 9644446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00340 1 398 Receptor kinase-like Gene Family AT5G20050 63.092 7.27e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops10g00340 Pkinase 6.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00340 - - vra:106757544 678.707