LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g00337	ATGACTACCACCACAACCACTAGCACCACTCTTTGCAGGGACGAATCCACCGACTACGACAGCAGCAGTTCAGTCTCCCTTTGCTCCTCCACCACTACCACCACCATTGACACCTCTCTCTACGCCAAGCCCCATAAGGCCAACGATGCTTCATGGGAAGCCATTCAGCTGCTCCGCCGCCACAAGGGAACCCTCGGCCTCCACCACTTCCGCCTTCTTCGGCGGCTCGGAGGTGGCGACATCGGGAACGTCTACCTCTGCCAGATAAGGAACCCCATGGTGGGTTTGCCTCAATGCTTCTACGCCATGAAAGTGGTTGACAGAGAAGCACTTGCCTTAAGGAAGAAGCTTCAAAGAGCAGAGATGGAGAAGGAGATTCTGGGTATGATTGATCATCCTTTTTTGCCTACTTTATACGCTGAGTTTGATGCTTCTCATTACTCTTGCTTGGTCATGGAGTTTTGCCCTGGTGGAGATTTATATGCTGCTCGCCAGCACCAGCCAGGGAAACGCTTCAGCATCACATCCACTAGATTTTATGCAGCTGAGACACTTGTGGCACTAGAGTATCTCCACATGATGGGTATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTGGTAAGGGGGGATGGCCACATTATGCTTTCAGATTTTGATCTTTGTCTCAAATGTGACGTTGTTCCCAAGCTATTGAGAAGTAAAACAAGATTGGAACAAAGTTTCAAGAGTACAAGGTGGTCAACACCTTCTTGTGCTGCCCCTATGTCATGTTTCACTGCATCAAGAAATAGAAAGAAAGCAACTTTGACAACAGTTATAAGGGAAAATGTTGAAGTCTATGAAGTTGATTCAGAGATAGTAGCAGAACCCATCAATGCAAGGTCCAAGTCATTTGTAGGAACACATGAGTATTTGGCACCAGAGGTGATTTCAGGGCAAGGACATGGTAGTGCTGTGGATTGGTGGACATTTGGAGTGTTCTTGTATGAAATGTTATATGGGAGAACACCTTTCAAAGGTGAAAACAATGAGAAAACTCTCATGAACATCTTGAAGCAGCCATTGGTTTTCCCTAGAATTGAATTGAGCAACTTTGAAGAGATGGTGAAAGTTCAAGACCTCATTAGCAAGCTCTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTGCATGGGATCAGTTGAGATTAAGAGGCATGGATTCTTCAATGGTGTTAATTGGGCTCTAATTAGATCAGTTAAGCCACCTCAGGTCCCTGCTGAAATTAACAAGATTAGGAGTAGGGTTTTGTGGCAGAAACTAAGCAAAAAAGACAAGGATCAACCATATCAGATTAGTCATCATTTTGACTACTTCTAA	1362	0.4515	MTTTTTTSTTLCRDESTDYDSSSSVSLCSSTTTTTIDTSLYAKPHKANDASWEAIQLLRRHKGTLGLHHFRLLRRLGGGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALALRKKLQRAEMEKEILGMIDHPFLPTLYAEFDASHYSCLVMEFCPGGDLYAARQHQPGKRFSITSTRFYAAETLVALEYLHMMGIVYRDLKPENVLVRGDGHIMLSDFDLCLKCDVVPKLLRSKTRLEQSFKSTRWSTPSCAAPMSCFTASRNRKKATLTTVIRENVEVYEVDSEIVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLMNILKQPLVFPRIELSNFEEMVKVQDLISKLLVKNPKKRIGSCMGSVEIKRHGFFNGVNWALIRSVKPPQVPAEINKIRSRVLWQKLSKKDKDQPYQISHHFDYF*	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g00337	453	FunFam	serine/threonine-protein kinase D6PK-like	294	421	-	-
	Rops10g00337	453	Coils	Coil	103	123	-	-
	Rops10g00337	453	Pfam	Protein kinase domain	71	228	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00337	453	Pfam	Protein kinase domain	296	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00337	453	Gene3D	Transferase(Phosphotransferase) domain 1	155	225	-	-
	Rops10g00337	453	MobiDBLite	consensus disorder prediction	1	21	-	-
	Rops10g00337	453	SUPERFAMILY	Protein kinase-like (PK-like)	51	427	IPR011009	-
	Rops10g00337	453	Gene3D	Phosphorylase Kinase; domain 1	68	154	-	-
	Rops10g00337	453	ProSiteProfiles	Protein kinase domain profile.	70	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00337	453	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468
	Rops10g00337	453	Gene3D	Transferase(Phosphotransferase) domain 1	293	421	-	-
	Rops10g00337	453	FunFam	protein kinase PINOID 2	68	154	-	-
	Rops10g00337	453	PANTHER	FLIPPASE KINASE 1-RELATED	16	424	-	-
	Rops10g00337	453	SMART	serkin_6	70	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00337	453	FunFam	protein kinase PINOID	155	223	-	-
	Rops10g00337	453	CDD	STKc_phototropin_like	68	426	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g00337	Rops-Chr10	9590577	9592234	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g00337	16	453	AGC Kinase Gene Family	AT2G26700	57.631	0.0	550

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Rops10g00337		Pkinase	1.7e-29	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g00337	K08286		-	gmx:100777988	687.182