Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00328 ATGGATGGGAACAAGGACGACGCGTTGAAATGCTTGAAAATTGGGAAAGAGGCGTTAGAAAACGGCGATCGTAACCGCGCTTTGAAATTCGTCACAAAAGCTCGTCGCCTCGATCCAACGTTGCCTGTTGACGATCTATTGTCCTCTATAGAGAGCGACGCAGGGGATCATCCCCCAACAGCTGCCGAACCGCCACCGAAGTCGGCCGATAACCCTTCAATTCGCCGAAGGCCTGCGGCGGCGCCGGGGCCTTCGTCATCGTCCTCGTCATCGGCTACATATAATGAGGATCAAATTTTAATTGTGAGGGAAATTAAGAGGAAGAAGAACTATTACGAGATTCTAGGGTTGGAGAAGAGTTGCACGGTGGAGGATGTGCGGAAAGCCTATAGAAAACTGTCTCTTAAGGTTCATCCTGACAAGAACAAAGCTCCGGGTGCTGAGGAAGCGTTTAAGGCTGTGTCGAAGGCGTTTCAGTGTCTTAGTAATGAGGAGAGTAGGAAGAAGTATGATCTTTCGGGTGAAGATGAATCGATTTATGAGAGGCGTGCTGCGAGGCCGGCAGCGAGGGGTTATAATGGTTTCTATGAGGCTGATATTGATGCTGATGAGATATTTAGGAATTTCTTCTTTGGAGGGATGGCCCCTGCAGCTAATTTTGGTGGCTTTAGTTTTGGACCAGGGATGGGTCATAGGCAGGCTGATCATGGTTCTGGTGGATTCAATCTTCGTGCTTTGATTCAGTTGCTTCCTGTTATTCTCATTTTGCTTTTGAACTTTTTGCCTTCGTCGGATCCAATCTATACACTTTCTCAGAACTATCCTTATGAACATCGCATCACTACGCCCAAAGGTGTTAATTATTATGTTAAGTCTGCAAAGTTTGCTGAGGATTATCCGCCGGGTAGCCGCCAGCTTGCGACTATTGAGGAGAGGGTTGATAGGGAGTACTTTGGCATTCTTCGCCAGAATTGTCAGTTTGAGTTGCAGCGTCGCCAGTGGGGATATATCCGGGAAACGCCACACTGTGATATGCTTCGCAAGTTTAATGTGGTGAATTGA 1062 0.4755 MDGNKDDALKCLKIGKEALENGDRNRALKFVTKARRLDPTLPVDDLLSSIESDAGDHPPTAAEPPPKSADNPSIRRRPAAAPGPSSSSSSSATYNEDQILIVREIKRKKNYYEILGLEKSCTVEDVRKAYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRKKYDLSGEDESIYERRAARPAARGYNGFYEADIDADEIFRNFFFGGMAPAANFGGFSFGPGMGHRQADHGSGGFNLRALIQLLPVILILLLNFLPSSDPIYTLSQNYPYEHRITTPKGVNYYVKSAKFAEDYPPGSRQLATIEERVDREYFGILRQNCQFELQRRQWGYIRETPHCDMLRKFNVVN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00328 353 MobiDBLite consensus disorder prediction 45 93 - -
Rops10g00328 353 SUPERFAMILY Chaperone J-domain 106 225 IPR036869 -
Rops10g00328 353 ProSitePatterns Nt-dnaJ domain signature. 151 170 IPR018253 -
Rops10g00328 353 PRINTS DnaJ domain signature 130 145 IPR001623 -
Rops10g00328 353 PRINTS DnaJ domain signature 112 130 IPR001623 -
Rops10g00328 353 PRINTS DnaJ domain signature 146 166 IPR001623 -
Rops10g00328 353 Pfam DnaJ domain 110 171 IPR001623 -
Rops10g00328 353 FunFam Chaperone protein dnaJ 49 106 221 - -
Rops10g00328 353 CDD DnaJ 110 163 IPR001623 -
Rops10g00328 353 ProSiteProfiles dnaJ domain profile. 110 174 IPR001623 -
Rops10g00328 353 SMART dnaj_3 109 166 IPR001623 -
Rops10g00328 353 Pfam Domain of unknown function (DUF1977) 262 333 IPR015399 -
Rops10g00328 353 PANTHER AT29763P-RELATED 1 348 - -
Rops10g00328 353 Gene3D DnaJ domain 106 219 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00328 Rops-Chr10 9366697 9368281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00328 97 171 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.202 7.05e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00328 K09518 - gmx:100793797 538.88