Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00314 ATGCCCTTTCTGAGCCAGCCACTAACTCCAACGTCTGTTGCTGTTGTGCCACAGCCACCTGGTATCCACCCTCGAGTGAGAGCAAGAAGAGGGCAAGCCACAGACCCCCATAGTATTGCTGAGAGGTTACGTCGTGAAAGAATCGCTGAAAGAATGAGGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGTGATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTTGGTTTCCTACTAACTCCACCATTACTGGGGAGATTCCCATCTTTTTATGGGCTCATTTTTCCTGTAAATGGGGTCCTTAATGTCGAAGTCCTGTCACACATTGGTCTCATCTACTATGCATTCCTCGGTGGTTTGGAGATGAACTTTAATACTATTATTCAAGTAAAAAAGAAGGCTGCAAGCATCGCAATTGCCGGGATCATATTTCCCATGGTGATGGCGCCAGGCTTCTATGCTTTACATAGAAAATTTTATGTTAGTGGTCCTGGACCTAGACTTGAAGAAAGTAAAATTAATGTTTATTTACTTTGGACTTTAGTTCTCACCGTAACAGGTTTTCCAGTCCTAGCTCTCACCCTTTCTGAGCTCAAGCTCCTTTACACCGGTCTTGGCAAAACCGCTTTAACAGCAGCCATGATCAGTGACACCTTAGGTTGGGTTCTTTTCACAATATTGGTTCCATTTGCAATTAATGGTGAAAGAGCAGTCTCCTCAGTACTAAGCACCATATTATTCATTATTGTCTGCATCTTTGTGGTACGTCCTATCCTTGTACGATTTATTGATCACAAGACAGACAAGGATGATTGGCATGATAACCAATTACTCTTTGTGGTACTGGGGGTTTTAGTTTGTTCATACATTACAGATATTCTTGGCACACATGGCATTGTTGGGGCTTTTGTGTACGGATTAATTTTACCTCATGGAAGATTTGCAGACTTGGTGACGTCAATTTTAGATGATTTTTGTGGCGGGTTTTTGGCACCGTTATTCTTTAGTGGCACTGGAATGAGACTTATGTTGTCCTCCATTTTCTACCAGGCACATTGGCCCTTAACATTGCTAGTTGTACTCTTGTTGTGTATTCCAAAGATTTTAAGCACTTTATTTGCCACTTTCTTCTTTGGTATGCGCGCTCGAGATGGTTTAGCCTTAGGCTTGCTTCTGAATACCAAGGGTGCCATGGCACTGATAATGCTGAACATTGCTTGGGATAGATCGATTTTTTCCATTTCAACCTATGCTGTTCTTACTTCCGCTGTTCTTCTAATGACTATAGTAGTGTCTCCCATCATCAATGCCATCTACAAGCCAAGAAAGAGATTTGAGCAGAACAAGCTAAAGACTATACAAAAGCTAAGAGCTGATGCAGAGCTCCGAATTTTGGCATGTGTCCACAATACTCGCCAGGCCACGAGCATGATCAGCATCATTGAATCTTTTAATGCCACCAGACTTTCCCCAATACATGTCTTTGCTCTTTACCTTGTTGAGCTTACTGGACGTGCTGCTGCCCTTGTTGCCGCCCATATGGAGAAGCCTAGTAATCAGCCCGGACTACAAAATCTCACCAAATCACAAGCAGAGTTAGAAAGCATTAACAATACCTTTGAAGCATTTGGAGAGGTATATGACGCTGTCAGAGTCCAGACCTTAAATGTTGTGTCAGCCTTTGCGACCATTCATGAGGACATATACAATTCAGCAAATGAGAAACTCACAAGCTTAATTCTCCTTCCATTCCACAAACAATTAAGTTCAGAAGGTGCACTCGAAACAACCAACGTAGTATACAAAGATATAAATCGAAATGTAATGGAAGGTGCACCTTGTTCTGTGGGAATCTTTGTTGATCGTGATCTTGGATCATTACCTAAAACGAACTTCCGTATTTTTATGCTCTTTGTTGGGGGGCCTGATGATCGTGAAGCCTTAGCTGTTGCGTGGAGGATGGCAGGGCATCCAGGAATCTGGTTATCAGTGGTTCGGATTCTTTTATTTGATGAAGCGGAAGAAGTAGATACTTCAATTCATGCTGAAGCACAAGGGATATTACATGCTGTAATAGATAGTGAGAAGCAGAAAGAATTAGATGATGAGTATATAAGTTCCTTTAGACTCACAGCAGTGAACAATGATGATTCTATATCTTACTCAGAGATTAATGTCCATACCAGTGAAGATATTCCTGCGGTTCTCAATGAAATAGAAAAAAATGGTTGCGATTTATACATAGTTGGACAAGGGAATTGTAGGTACTCTCGGGTCTTCTCAAATTTGTTGGAATGGTGTGATTGCTCAGAACTTGGAGTTATAGGGGATATTTTGGCTTCAAACAATTTTCGTTCGCGCTCATCTGTGCTAGTTGTGCAACAATATGGGTATGGAGGAATGGTTTTCCAAAAGCATCCTAACCATATGGCCACTAATAGTGAGGGCTTTGAGTCGCTTGTTGTGAAGACAGAATAA 2514 0.4181 MPFLSQPLTPTSVAVVPQPPGIHPRVRARRGQATDPHSIAERLRRERIAERMRALQELVPSINKTDRAVMLDEIVDYVKFLRLQVKVGFLLTPPLLGRFPSFYGLIFPVNGVLNVEVLSHIGLIYYAFLGGLEMNFNTIIQVKKKAASIAIAGIIFPMVMAPGFYALHRKFYVSGPGPRLEESKINVYLLWTLVLTVTGFPVLALTLSELKLLYTGLGKTALTAAMISDTLGWVLFTILVPFAINGERAVSSVLSTILFIIVCIFVVRPILVRFIDHKTDKDDWHDNQLLFVVLGVLVCSYITDILGTHGIVGAFVYGLILPHGRFADLVTSILDDFCGGFLAPLFFSGTGMRLMLSSIFYQAHWPLTLLVVLLLCIPKILSTLFATFFFGMRARDGLALGLLLNTKGAMALIMLNIAWDRSIFSISTYAVLTSAVLLMTIVVSPIINAIYKPRKRFEQNKLKTIQKLRADAELRILACVHNTRQATSMISIIESFNATRLSPIHVFALYLVELTGRAAALVAAHMEKPSNQPGLQNLTKSQAELESINNTFEAFGEVYDAVRVQTLNVVSAFATIHEDIYNSANEKLTSLILLPFHKQLSSEGALETTNVVYKDINRNVMEGAPCSVGIFVDRDLGSLPKTNFRIFMLFVGGPDDREALAVAWRMAGHPGIWLSVVRILLFDEAEEVDTSIHAEAQGILHAVIDSEKQKELDDEYISSFRLTAVNNDDSISYSEINVHTSEDIPAVLNEIEKNGCDLYIVGQGNCRYSRVFSNLLEWCDCSELGVIGDILASNNFRSRSSVLVVQQYGYGGMVFQKHPNHMATNSEGFESLVVKTE* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00314 837 Pfam Sodium/hydrogen exchanger family 81 448 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Rops10g00314 837 Gene3D - 25 78 IPR036638 GO:0046983
Rops10g00314 837 Pfam Helix-loop-helix DNA-binding domain 37 81 IPR011598 GO:0046983
Rops10g00314 837 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 87 IPR036638 GO:0046983
Rops10g00314 837 PANTHER CATION/H + ANTIPORTER 86 808 - -
Rops10g00314 837 SMART finulus 38 87 IPR011598 GO:0046983
Rops10g00314 837 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 81 IPR011598 GO:0046983
Rops10g00314 837 Gene3D - 79 461 IPR038770 -
Rops10g00314 837 FunFam Basic helix-loop-helix transcription factor 27 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00314 Rops-Chr10 8997591 9005952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00314 88 808 Antiporter Super Family AT2G13620 39.018 3.99e-177 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00314 Na_H_Exchanger 1.7e-43 CL0064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00314 - - gmx:100804266 1211.82