Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00305 ATGAGACAAGAAGCCTCAAACACGCTTCAACAGAGTCTGCAATTCATTTTGCAGAACCGTCCTGAGTGGTGGGTGTACGCCATATTTTGGCAAGCTTCGAAAGACAGTAATTCTAGAGTTATATTAGAATGGGGTGATGGCTACTTTCATGGTTTGAAGGCCAGAGAGAAAAAAGAACGCATGTTGGAAGAGCCAACGAGGGATGTGATTGACATTGAGTGGTTCTACATGGTGTCACAAACTCGCTCATTTAGCGTTGGGGATGGTGTCATTGGATGTGTCTTTAGCTCTGGAGCAGATGTTTGGTTGAGCGGAGTGAAGGAGTTTCAATTGAACGAATGTGATCGAGTTAGAGAAGCTCATAATCATGGTATTCACACTTTAGTGTGCATTTCTACAGCTACTGGTGTCATTGAGCTGGGTTCGTCTGACGTGTTCAACCAAGATTATAGCCTGTTCCAAATGGCCAAATCAGTTCTTGAAAAGAACAACCAAGCCATTGCCACTGCCCACGACACATGTGATGATCATCAAACTCAACTTTACAGTACCAATATCCCAGGGACAAAGACCAATAAAGACAAAAACAAGCTCAAGCAACAACAGAGAAGGGAGTTAAATGATGAAGAAGCCCCTTCAACTGCAAAGGCACCGCGGGCAGATGGATCTTCCTCAGATTCATCAGATTCTGAGGCTCCTTTTGCCATTGCAGGAACCAGTAATAATGTTCCAATGATGTTGAGAAGGCGAGAAGGGAGTCAATTGCCTCTGAATCACGTGGAGGCTGAGAGGCAAAGACGAGAGAAGCTGAATCAAAGATTCTATGCTCTCCGTTCCGCTGTCCCGAACGTGTCCAAGATGGATAAAGCGTCCTTACTTTCGGACGCGGTTGCCTATATCAATGAACTGAAGGCCAAAATTGACCAGCTGGAAAGCAGATCAGAGAGACATGGGGAGAGATTCAAACAAGAAACTGCAGAGCAAATCAAAACCATGCAATCCTCAAGCTCTGCATCCGATGTGCTGGGAGTTGAAGTAAAGATCTTGGGAACTGAAGCAATTATAAGGGTCCAGAGCCTAAACATGAATCACCCCCCTGCAAGGTTAATGGATGCTCTCAGAGACCTCCATTTGCAAATTCTCCATGCCACCATCACAAACATCAAAGAAATGATGCTGCAAGACGTTGTTGTTAGGGTTCCCCATGACCTCATGACTGAAGAGGCAATGAAAAATGCCATTATTCAAAGACTCTGA 1257 0.4479 MRQEASNTLQQSLQFILQNRPEWWVYAIFWQASKDSNSRVILEWGDGYFHGLKAREKKERMLEEPTRDVIDIEWFYMVSQTRSFSVGDGVIGCVFSSGADVWLSGVKEFQLNECDRVREAHNHGIHTLVCISTATGVIELGSSDVFNQDYSLFQMAKSVLEKNNQAIATAHDTCDDHQTQLYSTNIPGTKTNKDKNKLKQQQRRELNDEEAPSTAKAPRADGSSSDSSDSEAPFAIAGTSNNVPMMLRRREGSQLPLNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVAYINELKAKIDQLESRSERHGERFKQETAEQIKTMQSSSSASDVLGVEVKILGTEAIIRVQSLNMNHPPARLMDALRDLHLQILHATITNIKEMMLQDVVVRVPHDLMTEEAMKNAIIQRL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00305 418 Coils Coil 293 327 - -
Rops10g00305 418 MobiDBLite consensus disorder prediction 218 237 - -
Rops10g00305 418 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 159 IPR025610 -
Rops10g00305 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
Rops10g00305 418 PANTHER MYC 6 417 IPR045084 GO:0003700|GO:0006355
Rops10g00305 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 320 IPR036638 GO:0046983
Rops10g00305 418 Gene3D - 248 319 IPR036638 GO:0046983
Rops10g00305 418 Pfam Helix-loop-helix DNA-binding domain 258 303 IPR011598 GO:0046983
Rops10g00305 418 SMART finulus 260 309 IPR011598 GO:0046983
Rops10g00305 418 MobiDBLite consensus disorder prediction 179 242 - -
Rops10g00305 418 MobiDBLite consensus disorder prediction 192 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00305 Rops-Chr10 8744319 8745575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00305 8 418 EF-hand Containing Proteins AT5G46830 32.500 8.06e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00305 bHLH-MYC_N 4e-38 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00305 - K13422 pvu:PHAVU_004G090300g 445.277