Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00296 ATGATTCTCTGGAGAAACCATGTTACCCTATTTCTGATGTTATCTCTGTTTGGAATTGGATCATTACAGTCCTCCTCAGCAGCTCCAGTTTACAGCTATAATTATTGCCCAAACAACAAAACCTACGAATCCAACAGCACATTCCGAACCAATCTGAATGTCCTACTCTCATCACTCGTCTCCAACGTCTCCCAATCTGACGGCTACTATGCTTCAGCCATGGGCAGAGGAACCATAAACGTGGCCGATGGCGAATTCCTGTGCCGCGGCGATGTCTCCTCCACCACGTGTCAAGAGTGTGTCGCCACCGCAGTCAGAGAGATAACACGGCGCTGCCCAAATCAGACAGAGTCCATAATATGGTACGATGAGTGCATGCTGAGTTACACCAACCGCTACTTCGCCCCAACCAGCATCACCCCAGGAGCAAGGTTGTCGGATGAAAACAACGTCTCTGCCTCGGATTTTGACAGCTTCAACACAACGTTGTTCGCTTTGTTGAATAGTTTGAGTGAAGAAGCTTCTAGTTCCGAATCGGCAAGGAAATTCGCCACGGGGGATGAGGAGTTTGGGACAGGCTCCTCGCGGGTGTATGGGATGGTGGAGTGCATGCCGGGCATGACGAGAAGTCAGTGTGATGAGTGTTTGCAAAATGCGATTGGAACTCTTCCAGAGTGTTGCGGAGGAAAAGAAGGTGCCAGAGCTCTGCTTGCCAACTGTTATCTCAGATACCAATTGTATAAGTTTTACAATACAACCGGGACATCTCCTTCTTCAGGAGATGATAAATCTGAATCACGGAAAATTGTCTTGATTGTCGTCATTGTTGTGATTTCGATAATTGTCTTTTGTTGTGTCTGCTATTTGCTGCTGAGAAGATCAAGGAAGAAGAATAGGACTCTTCTAAGAGATAATTTTGGGGATGAAAGTGCCACTTTGGAATCGTTACAATTCAGTTTACCTATGATTGAAGGTGCCACAAGGAAGTTTTCAAGTGAAAACAAAATTGGAGAAGGTGGATTTGGAGAGGTTTACAAGGGCGTTCTTTTAGATGGACGGGAAATAGCTGTTAAAAAACTCTCACGGAGCTCAGGACAAGGTGCAATAGAATTCAAGAATGAGATTGTCCTAATAGCCAAACTTCAACATAGAAACTTGGTGACATTGTTAGGATTTTGCTTGGAAGAAAGAGAGAAAATGCTTATTTATGAATTTGTGCCTAACAAGAGTCTTGATTACTTTCTATTTGATCCCCACAAGAGTAGAATATTGAATTGGTTAGAGCGTTACAGAATTATTGAAGGAATTGCAAGAGGAATTCTATATTTACATGAGCATTCACGATTGAAAGTTATACATCGTGATCTTAAACCTAGTAATGTATTGTTAGATGACAACATGAATCCAAAAATATCTGATTTTGGCTTGGCAAGGATTGTCTCTATAGATCAAGATCGAGGAAATACAAATAGAATCGTTGGAACATTTGGTTATATGTCTCCAGAATATGCAATGCATGGACAGTTTTCAGAAAAATCAGATGTCTTTAGTTTTGGTGTCATAGTTTTGGAGATAATTAGTGCAAAAAGGAATGCTCGTTCTCTTTTAACAGATGATGATGATGACCTCTTGAGTTATGCTTGGAGGCAATGGAAGGATCAAACACCATTAAAAATATTAGATCAAGATATAAAAGAATCTTGCAGTTATAGTGAAGTCATTAAGTGCATCCAAATTGGTTTATTATGTGTACAAGAGAAACCTGATAATAGACCTACGATGGCAAATATTGTTACATATCTCAGTACCCCTTTAGCTGAGTTGCCATTTCCTGGAGAGCCGACAAATTCAAAGCAAAGTGGAATAGTTCAAAAGATGGTACCAGGCGAGTCTAGTTCTGGTTCTGCAATATCAATGAATGAAATGTCTGTGAGTGTATTTATTCCTCGATAG 1953 0.4101 MILWRNHVTLFLMLSLFGIGSLQSSSAAPVYSYNYCPNNKTYESNSTFRTNLNVLLSSLVSNVSQSDGYYASAMGRGTINVADGEFLCRGDVSSTTCQECVATAVREITRRCPNQTESIIWYDECMLSYTNRYFAPTSITPGARLSDENNVSASDFDSFNTTLFALLNSLSEEASSSESARKFATGDEEFGTGSSRVYGMVECMPGMTRSQCDECLQNAIGTLPECCGGKEGARALLANCYLRYQLYKFYNTTGTSPSSGDDKSESRKIVLIVVIVVISIIVFCCVCYLLLRRSRKKNRTLLRDNFGDESATLESLQFSLPMIEGATRKFSSENKIGEGGFGEVYKGVLLDGREIAVKKLSRSSGQGAIEFKNEIVLIAKLQHRNLVTLLGFCLEEREKMLIYEFVPNKSLDYFLFDPHKSRILNWLERYRIIEGIARGILYLHEHSRLKVIHRDLKPSNVLLDDNMNPKISDFGLARIVSIDQDRGNTNRIVGTFGYMSPEYAMHGQFSEKSDVFSFGVIVLEIISAKRNARSLLTDDDDDLLSYAWRQWKDQTPLKILDQDIKESCSYSEVIKCIQIGLLCVQEKPDNRPTMANIVTYLSTPLAELPFPGEPTNSKQSGIVQKMVPGESSSGSAISMNEMSVSVFIPR* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00296 650 Gene3D Transferase(Phosphotransferase) domain 1 406 608 - -
Rops10g00296 650 CDD STKc_IRAK 336 601 - -
Rops10g00296 650 ProSiteProfiles Gnk2-homologous domain profile. 141 249 IPR002902 -
Rops10g00296 650 SMART serkin_6 330 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00296 650 Gene3D - 143 249 IPR038408 -
Rops10g00296 650 Gene3D - 29 134 IPR038408 -
Rops10g00296 650 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Rops10g00296 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 645 - -
Rops10g00296 650 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 292 405 - -
Rops10g00296 650 Gene3D Phosphorylase Kinase; domain 1 293 405 - -
Rops10g00296 650 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 134 - -
Rops10g00296 650 SUPERFAMILY Protein kinase-like (PK-like) 314 614 IPR011009 -
Rops10g00296 650 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Rops10g00296 650 FunFam cysteine-rich receptor-like protein kinase 10 406 608 - -
Rops10g00296 650 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00296 650 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Rops10g00296 650 Pfam Salt stress response/antifungal 154 246 IPR002902 -
Rops10g00296 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Rops10g00296 650 FunFam Cysteine-rich receptor-like protein kinase 10 143 249 - -
Rops10g00296 650 Pfam Protein tyrosine and serine/threonine kinase 333 601 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00296 Rops-Chr10 8534025 8537879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00296 4 650 Receptor kinase-like Gene Family AT4G05200 44.070 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops10g00296 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00296 - - gsj:114402923 908.286