Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00287 ATGAACAAGATTCCATTTAAAGAACTGACTAGTTTCCACTCATTCCCAATTGAAGCTGAAAATGGTGATGAAATTGGGCCAACTGAGACATTGCAATTGGACTTCGCCACCATCATGGTTGCTACTGAGAACTTTTCTGACGCAAGGAAGCTAGGACAAGGAGGATTTGGATCTGTTTACAAGGGTAGGCTCTCCAATGGTCAGGAAGTTGCAATCAAGAGGTTGTCTATGAATTCCAGCCAAGGAGACACAGAGTTTAAGATTGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTGAGACTACTAGGTTTCTTTTTCGAAAGAAGAGAGAGGCTACTGGTCTATGAGTTTGTTCCCAATAAAAGCCTTGATTTCTTCATATTTGAGATGAACCCCAAGATATCAGATTTTGGCATGGCAAGTCTAGTTGGAATAGACCAAACTCAAGGAAATACAAGTAGAATTGTTGGAACCTATAGATATATGGCACCTGAGTATGCTATCCATGGACAATTCTCAGTGAAGTCTGATGTATTTGGTTTTGGAGTACTTGTTTTGGAGATTATAAGTGGCCAGAAAAATAGTGTTGTCCGCCAAGGGGAGGATGTAGTGGATCTCGCATGGCAAAAGTGGAGGGAAGGGACAACCTCAAGCATTTTTGATCCCACAATAATTGATGGTTCAAGAAATGAGATAATGAGATGCATTCACATTGCACTGCTTTGTGTTCAGGAAAGTTTAGCTGACAGACCAACCATGGCTTCAACAGTGGTTATGCTCAACAGTTACTCTGTCACTCTTCCATTGCCCACACAACCTGCTTACTTTACAAGTTTTTCGGTTAAGAAGCATGGATACGACACGGGACACCGATACGACACGATACAAACACAAGGATACGACGAATTTTAA 921 0.4148 MNKIPFKELTSFHSFPIEAENGDEIGPTETLQLDFATIMVATENFSDARKLGQGGFGSVYKGRLSNGQEVAIKRLSMNSSQGDTEFKIEVLLVAKLQHRNLVRLLGFFFERRERLLVYEFVPNKSLDFFIFEMNPKISDFGMASLVGIDQTQGNTSRIVGTYRYMAPEYAIHGQFSVKSDVFGFGVLVLEIISGQKNSVVRQGEDVVDLAWQKWREGTTSSIFDPTIIDGSRNEIMRCIHIALLCVQESLADRPTMASTVVMLNSYSVTLPLPTQPAYFTSFSVKKHGYDTGHRYDTIQTQGYDEF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00287 306 Gene3D Transferase(Phosphotransferase) domain 1 117 270 - -
Rops10g00287 306 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Rops10g00287 306 Pfam Protein kinase domain 46 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00287 306 ProSiteProfiles Protein kinase domain profile. 45 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00287 306 FunFam Cysteine-rich receptor-like protein kinase 10 9 120 - -
Rops10g00287 306 Gene3D Phosphorylase Kinase; domain 1 17 116 - -
Rops10g00287 306 Pfam Protein tyrosine and serine/threonine kinase 136 260 IPR001245 GO:0004672|GO:0006468
Rops10g00287 306 SUPERFAMILY Protein kinase-like (PK-like) 35 287 IPR011009 -
Rops10g00287 306 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 132 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00287 Rops-Chr10 8340582 8342161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00287 19 278 Receptor kinase-like Gene Family AT4G23230 52.396 7.66e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops10g00287 PK_Tyr_Ser-Thr 2.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00287 - - ccaj:109806154 396.741