Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00276 ATGCTAATATCTCCATCCCTGGTCGAACTCCGAGGGTGCAACTCGTGTTCGTGTAAACCTCTCACGGTCAAGTTGATTTGTCCACCCACGGCAGATTTAGTTTATGAAGTTGGGCTCATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTACAGCAGATCGGAGAAAGATGGATGGAATGCTTATGGGAGATGACTTCATGCTCCAGTTGTGTGGGAAGTATAGGGATATGGCTCTGGCTGTAAAGGATCCATGCCATCTTAACGTGGCAGCCTGTCTTATTAAGCTGAACCGCTATGAAGAAGCTATAGGGCAATGCAACATTGTATTGGGTGAGGATGAGAACAATGTCAAGGCATTATTTAGACGAGGTAAGACTAGAGCAGCACTTGGGCAAGCAGATGCTGCCAGGGAAGATTTTCTAAGAGCACGAAAATATGCCCCTGAAGATAAAGCAATTGCAAAAGAATCAAGGTTGTTTGTTGAACATGACAAGGCTACTTACCAAAAGCAGAAAGAGAATTATAAAGGAATATTTGGAGCAGGCCGAAAAAATCTAGCCCTGTCACTCATCCGTATTGGAGTATTGTGGGGAAACCGCATCACCCAGAAATGGAGCCACCAAAGCTTCCGCTTCCACGGGTTGAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGAATGTTGGACGTTTTGTTGTGTTGTTGCTGGAGAGTCCGAATTCGGAACTGTGGCTACCCGAGTCTGCCACCCTGGATGATGCACCAACATGCCACAGTGCATGCAATGCATGCAGGAACGTGA 840 0.4548 MLISPSLVELRGCNSCSCKPLTVKLICPPTADLVYEVGLIGFDETKEGKARSDMTVEERIGTADRRKMDGMLMGDDFMLQLCGKYRDMALAVKDPCHLNVAACLIKLNRYEEAIGQCNIVLGEDENNVKALFRRGKTRAALGQADAAREDFLRARKYAPEDKAIAKESRLFVEHDKATYQKQKENYKGIFGAGRKNLALSLIRIGVLWGNRITQKWSHQSFRFHGLKKICKNLGQWFSGMLDVLLCCCWRVRIRNCGYPSLPPWMMHQHATVHAMHAGT* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00276 279 Gene3D Tetratricopeptide repeat domain 71 156 IPR011990 GO:0005515
Rops10g00276 279 SMART tpr_5 94 127 IPR019734 GO:0005515
Rops10g00276 279 SMART tpr_5 128 161 IPR019734 GO:0005515
Rops10g00276 279 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Rops10g00276 279 SUPERFAMILY TPR-like 95 165 IPR011990 GO:0005515
Rops10g00276 279 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 83 196 IPR039663 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00276 Rops-Chr10 8162306 8163145 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00276 26 194 Calmodulin-binding Proteins AT3G25230 29.412 9.41e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00276 - - gmx:100790587 267.314