Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00274 ATGAATCGTCTCAGAAAGAGCAGACAGAAGCAAAGCTATGATGCTCCACTAACAGCAATGTCTCAAGACAGCAAGGCTCACTACTCAAGGTCACCAACAGAAAAGTTCCAAGAAAGCCAAGTGCAGAGCTCGAGATCAAGGGAGTGGGATGGCGTGATCTGCACGATTTCATGTTCAACACCAAGGGCTATGCTCGCCACCAAGGCTGCATTGAGGGAAGCTTACAAGAACAAGAAGTACTTGCCATTTGCTCTCCATCCCAAGAAGACCAGGGCTATTCGTAGAAGACTCACCAAGCACCAGGCGTCATTGAAGACTGAGCGTTCAACACCATTGGTGTCATTGATGCCATGGGTACCAGAGGCATGTCTTATAGTTTGCAATCTGCACAATGGTATGATGCTAATATCTCCATCCCTGGTCGAACTCCGAGGGTGCAACTCGTGTTCGTGTAAACCTCTCACGGTCAAGTTGATTTGTCCACCCACGGCAGATTTAGTTTATGAAGTTGGGCTCATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTACAGCAGATCGGAGAAAGATGGATGGAATGCTTATGGGAGATGACTTCATGCTCCAGTTGTGTGGGAAGTATAGGGATATGGCTCTGGCTGTAAAGGATCCATGCCATCTTAACGTGGCAGCCTGTCTTATTAAGCTGAACCGCTATGAAGAAGCTATAGGGCTATGCAGCATTGTATTGGGTGAGGATGAGAACAATGTCAAGGCATTATTTAGACGAGGTAAGACTAGAGCAGCACTTGGGCAAGCAGATGCTGCCAGGGAAGATTTTCTAAGAGCACGAAAATATGCCCCTGAAGATAAAGCAATTGCAAAAGAATCAAGGTTGTTTACTGAACATGACAAGGCTACTTACCAAAAGCAGAAAGAGAATTATAAAGGAATATTTGGAGCAGGCCAAAAAACTCTACCCCTGCCACTCATCCGTATTGGAGTATTGTGGGGAAACCGCATCACCCAGAAATGGAGCCACCAAAGCTTCCGCTTCCACGGGTTGAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGAATGTTGGACGTTTTGTTGTGTTGTTGTTGGAGAGTCCGAATTCGGAACCTTGGCTACCCGAGTCTGCCACCCTGGATCATGCACCAACATGCCACAGTGCATGCAATGCATGCAGGAACGTGA 1239 0.4633 MNRLRKSRQKQSYDAPLTAMSQDSKAHYSRSPTEKFQESQVQSSRSREWDGVICTISCSTPRAMLATKAALREAYKNKKYLPFALHPKKTRAIRRRLTKHQASLKTERSTPLVSLMPWVPEACLIVCNLHNGMMLISPSLVELRGCNSCSCKPLTVKLICPPTADLVYEVGLIGFDETKEGKARSDMTVEERIGTADRRKMDGMLMGDDFMLQLCGKYRDMALAVKDPCHLNVAACLIKLNRYEEAIGLCSIVLGEDENNVKALFRRGKTRAALGQADAAREDFLRARKYAPEDKAIAKESRLFTEHDKATYQKQKENYKGIFGAGQKTLPLPLIRIGVLWGNRITQKWSHQSFRFHGLKKICKNLGQWFSGMLDVLLCCCWRVRIRNLGYPSLPPWIMHQHATVHAMHAGT* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00274 412 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 216 328 IPR039663 -
Rops10g00274 412 SMART tpr_5 261 294 IPR019734 GO:0005515
Rops10g00274 412 SMART tpr_5 227 260 IPR019734 GO:0005515
Rops10g00274 412 MobiDBLite consensus disorder prediction 1 42 - -
Rops10g00274 412 ProSiteProfiles TPR repeat profile. 261 294 IPR019734 GO:0005515
Rops10g00274 412 MobiDBLite consensus disorder prediction 11 42 - -
Rops10g00274 412 SUPERFAMILY TPR-like 228 298 IPR011990 GO:0005515
Rops10g00274 412 Gene3D - 80 117 - -
Rops10g00274 412 Gene3D Tetratricopeptide repeat domain 203 289 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00274 Rops-Chr10 8141479 8145717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00274 68 108 Cytoplasmic Ribosomal Protein Gene Family AT3G55170 87.805 2.02e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00274 - - gmx:100790587 270.781