LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g00265	ATGCTCTCTTTGCTTTATCTACTAGTTGTTATTGTGATATCTAAGGCCACTGCCAAGCCAGAATACCAATACACTGTCTGCTTCACAGGTGGAGATTATGCCCCTAACAGCACCTACCATACCAACCTCAAAGCACTTCTTCTTTCAAGGCTCACTTCCAACACACAAATTGACTATGGTTTCTACAATTCCTCCTATGGTGGCTTAAAGGATGAAGTCTACGCCACTGGACTTTGCAGGGGAGATGTGACCCCAACTACTTGCCGTAGTTGCCTCAACGATTCTAGTTTCCTTCTCCTAAAGGAATGTCCACATCAGAAGGAGGCATTTGGAGGATATGATAAATGCACATTACACTATGCACATCGCACGATATTTGGTTACGACTCATATGAACATGCATTTGGGGTCTACAATGTGTCAGGTAATACTACAACAATCAAACCTTATTCCGCAGGGTGGGTTCGGTTACATGGATCAAACGACGCCTACGTGTCAAGTGATACTAATGTAACAAATTGGGATGAGTACAATTATGTGCTCACCAACTTGCTGTCAAGACTAAGAGTGAAAGCTGCAACGGGTGATTCCAACCCTAATCGTAAGTTTGCTGCAGGAAAAGCAAAAGTAGCAGGTCAGAGTCATCAAACTATATATGCTGTGGTTCAGTGCTCACCTGATATATTAGAGGCAGAATGCAATGACTGCTTGGCTGGTGCTTTCTCAGAAATACCAAAATATTGTTATAACAAGTCAGGTGGTGCAATCATTAGATTCAGTTGTAACTTCAGATATCAAAATTCCAGCTTCTGTGACCCTATGGCTGATGAATTGACCCTGCAATTACAATTGTCACCGCAAGGATCCCCTGCTCTTCCTGCTACAAACTCCTCACACACAACTCATCACGGAAACAAAAACAGGTCACGAGCTGTCATGGTCAAAGTTGTGCCTACTGTTGCCTTTGTTGGGTTGCTGATCTTTATTTGCATCTATTTCATAATGAGGAAGAAAACAAAATATGTTGAGAGTGAACCTAAAGCTGTCAGTGAAAATAAACAAGAGTCATCACAATTTGACTTTGACACCATCAGAATAGCTACAAATGACTTCTCAGATGCAAATAAACTTGGACAAGGTGGATTTGGACCTGTTTACAAGGGCAGGCTCTTTAATGAACAAGAAATTGCAGTCAAAAGGTTAGCTGGGAATTCTGGCCAAGGAGATACCGAATTTAAGAATGAAGTGCTATTAATGGCCAAGCTTAAGCACCGAAATTTAATCAGGCTCCTTGGTTTCTGTTCTAAAAGAGAAGAACGGCTACTTATCTATGAGTTTCTACCCAATAAAAGCCTTGACTACTACTTATTTGATCCAACAAAGCGTGCACATTTATATTGGAATACACGCTACAAATTAATTGAAGGCATTGCACGAGGCCTTCTTTACCTTCATGAGGATTCTCAACAGAGGATTATTCATCGTGATCTCAAACCAAGTAACATTCTTCTTCTAGATGCAGAGATGAACCCCAAGATATCAGATTTTGGCTTGGCAAGGCTGTTTGTTGTGGATCAAACTCAGGCTGTCGCAAGTAAAATTGCAGGAACTCTCGGATATATGGCACCTGAGTATGCGAGGCATGGAAAATTCTCAGCCAAGTCAGATGTCTTTAGCTTTGGAGTTATAATTCTAGAGATTGTAAGTGGCCAAAAGAATAGCGGATTCCACAATGGAGAGAATGTGGAGCATCTATCAAGCTTTGCTTGGAAAAACTGGATGAAAGGGACAATTTCTGATATTATAGATCCTACCCTAAATGATGCTTCAAGAAATGAAATAGTAAGATGCATTCACATTGGGTTACTATGTGTTCAAGAAAGGGTTGCAGACAGACCAACATTGGCTTCAGTTGTGCTTATGCTTGATAGCCACTCTTTCTCTCTCCCAAATCCCTTGCAACCTGCCTTTTTTATGAATTATAGATGTTTGCCAGACATCCAATTTTCGGAGTGCAGTTATGTGGCAACAGGATCAAATGAACAGAAAAGTAACTATGTTGAAGCATCGATAAATGAGGCCTCAATTAGCAGTCTATATCCTCGTTAG	2109	0.4087	MLSLLYLLVVIVISKATAKPEYQYTVCFTGGDYAPNSTYHTNLKALLLSRLTSNTQIDYGFYNSSYGGLKDEVYATGLCRGDVTPTTCRSCLNDSSFLLLKECPHQKEAFGGYDKCTLHYAHRTIFGYDSYEHAFGVYNVSGNTTTIKPYSAGWVRLHGSNDAYVSSDTNVTNWDEYNYVLTNLLSRLRVKAATGDSNPNRKFAAGKAKVAGQSHQTIYAVVQCSPDILEAECNDCLAGAFSEIPKYCYNKSGGAIIRFSCNFRYQNSSFCDPMADELTLQLQLSPQGSPALPATNSSHTTHHGNKNRSRAVMVKVVPTVAFVGLLIFICIYFIMRKKTKYVESEPKAVSENKQESSQFDFDTIRIATNDFSDANKLGQGGFGPVYKGRLFNEQEIAVKRLAGNSGQGDTEFKNEVLLMAKLKHRNLIRLLGFCSKREERLLIYEFLPNKSLDYYLFDPTKRAHLYWNTRYKLIEGIARGLLYLHEDSQQRIIHRDLKPSNILLLDAEMNPKISDFGLARLFVVDQTQAVASKIAGTLGYMAPEYARHGKFSAKSDVFSFGVIILEIVSGQKNSGFHNGENVEHLSSFAWKNWMKGTISDIIDPTLNDASRNEIVRCIHIGLLCVQERVADRPTLASVVLMLDSHSFSLPNPLQPAFFMNYRCLPDIQFSECSYVATGSNEQKSNYVEASINEASISSLYPR*	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g00265	702	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	20	125	-	-
	Rops10g00265	702	ProSiteProfiles	Protein kinase domain profile.	371	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00265	702	SUPERFAMILY	Protein kinase-like (PK-like)	355	671	IPR011009	-
	Rops10g00265	702	Pfam	Protein tyrosine and serine/threonine kinase	375	639	IPR001245	GO:0004672\|GO:0006468
	Rops10g00265	702	FunFam	Cysteine-rich receptor-like protein kinase 10	335	446	-	-
	Rops10g00265	702	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	30	698	-	-
	Rops10g00265	702	Pfam	Salt stress response/antifungal	169	267	IPR002902	-
	Rops10g00265	702	Pfam	Salt stress response/antifungal	31	121	IPR002902	-
	Rops10g00265	702	FunFam	Cysteine-rich receptor-like protein kinase 28	447	650	-	-
	Rops10g00265	702	ProSiteProfiles	Gnk2-homologous domain profile.	159	270	IPR002902	-
	Rops10g00265	702	Gene3D	Transferase(Phosphotransferase) domain 1	447	649	-	-
	Rops10g00265	702	Gene3D	-	161	270	IPR038408	-
	Rops10g00265	702	Gene3D	-	20	124	IPR038408	-
	Rops10g00265	702	SMART	serkin_6	371	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00265	702	FunFam	Cysteine-rich receptor-like protein kinase 10	161	270	-	-
	Rops10g00265	702	CDD	STKc_IRAK	377	643	-	-
	Rops10g00265	702	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	492	504	IPR008271	GO:0004672\|GO:0006468
	Rops10g00265	702	Gene3D	Phosphorylase Kinase; domain 1	333	446	-	-
	Rops10g00265	702	ProSiteProfiles	Gnk2-homologous domain profile.	21	125	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g00265	Rops-Chr10	7971855	7979521	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g00265	27	702	Receptor kinase-like Gene Family	AT4G21410	44.863	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops10g00265		PK_Tyr_Ser-Thr	8.1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g00265	-		-	gmx:100790058	910.983