Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00263 ATGTCAAAGAAGAAGTCTAGTTTAGGTCGCCAAAAGATCCCTATTGAGAAAATACCCAAGAAAAGTCATCTTCAAGTTACATTCTCAAAGCGTCGTTCAGGGTTGTTTAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGGGTAGAGATTGCAATTGTGGTTTTCTCACCAGCTGATAAGGCATTCTCTTTTGGGCACCCAGAAGTTGAGTCCATCATTGATCGTTATCTCACTAGAAACCCTCCACAAGAGTCTTCTAGTGGTGCCCACCAACTTGTTGAGGCTCATAGAAATGCTAATGTACGTGATCTCAACATGCACCTAACTCAACTTCTCAACCATTTGGAGATTGAGAAGAAGAGAGGAGAAGAGTTTGATCATGTGAGGAGAGCTAGGCAGAGACAATATTGGTGGGAGAGTCCTATTGATGAGATTGGCTTGAATGAATTGCTCCAATTAAAGGGTTCTATTGAGGAGCTTAAGAATAACTTGGGGAAATTTGCTACCAAATTCATGATGGAACAATCTTCAACAAATAATATTGGTGGGGCTAATGGACTTGCACGTTTTGATGCTTTTGACAACAACAAATCTGCTGCTGGGGCTTCAACACTTCCTAATGCCTATTATCTTGGTTATAGGCATGGGTGTCTTTAA 657 0.4125 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIIDRYLTRNPPQESSSGAHQLVEAHRNANVRDLNMHLTQLLNHLEIEKKRGEEFDHVRRARQRQYWWESPIDEIGLNELLQLKGSIEELKNNLGKFATKFMMEQSSTNNIGGANGLARFDAFDNNKSAAGASTLPNAYYLGYRHGCL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00263 218 PANTHER MADS BOX PROTEIN 10 164 - -
Rops10g00263 218 Gene3D - 90 186 - -
Rops10g00263 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Rops10g00263 218 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Rops10g00263 218 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Rops10g00263 218 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Rops10g00263 218 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Rops10g00263 218 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Rops10g00263 218 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Rops10g00263 218 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Rops10g00263 218 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Rops10g00263 218 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00263 Rops-Chr10 7955624 7956280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00263 5 194 Type I MADS-box Gene Family AT5G60440 49.215 2.16e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops10g00263 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00263 - - lja:Lj0g3v0067779.1 335.495