Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00262 ATGAATTCCGAGACCGATGACATTGGTGTTGTAGAGAAAGATCCAACTTCACGATATGCACGGTATGATGAAATGTTGGGGAAAGGAGCCTTCAAGACTGTATATAAAGCGTTTGATGAAATAGATGGAATAGAAGTTGCGTGGAACCAAATCAGTGTTGAGGATGTTATGCAGTCACCTCGACAGTTGGAAAAGTTGTATTCGGAGGTTCATCTCCTCAAATCATTGAAACATGAAAATATCATTAAGTCGTACAATTCTTGGGTGGATGATAAGACCATGACCATCAACATGATTACCGAGTTGTTCACATCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCAAGGCAGATTCTCCGAGGCTTGTGCTATCTGCACAGTCACAATCCTCCTATTATTCATAGGGATCTCAAGTGTGATAATATTTTTGTTAATGGAAACAATGGAAAAGTTAAGATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCTACTGCCCGCAGTGTGATTGGTACACCGGAATTCATGGCCCCGGAGCTTTATGAGGAAGAATACAATGAACTGGTTGACATATATTCCTTTGGCATGTGTATGTTGGAAATGATTACCTGTGAGTACCCGTATAGTGAATGTAAAAATCCAGCTCAGATATACAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATACTGAAGTGAAGCAATTTATAGAGAAGTGTTTAGTTCCAGCATCTATGAGATTGTCTGCATCTGAATTACTGGAAGACCCATTCCTTGCAACTGAAAGCGCAAAGGAGATCAATCATGATATGCTGCAGCTTCGTAATCCCCACACCAAATTGGTGAATCCACCAACATGTGAGCCTCATCCCATGGAGATAGATTCAAACTTCAGGCTCACTTCACCTGGCTCATCTACGACAAGAATTAAAGAAACTTCTCAAGTTTCAAGTTTTGATCTCCTGAGGAAGACTGAGAATAATGAATTTAGGTTAAGAGGGGAGAAAGGTGCTGAGCGTGCAATTTCACTTACGCTGCGAATTGCTGATGCTCATGGTGGAGCAAGGAATATCCATTTTCCATTCTATATTGATTCTGATACAGCGATTTCAATTGCTGAGGAGATGGTGGAACATCTGGAACTCAAGGATCAGGATGTAGCTGTAATTGCTGAGCTAATACACAAGATGGTTGTTGAGCTTGTGCCCGACTGGAAACCCTCATGTGAGAACCTCTCATCTGGAACAGATCATTTGCACAGGCCTTCTTCTGAAGTTCAGAATCCATTACGATCAAGTGATTTTGATACGAAGGCAATTTATGAAGATTTAGTTCACTCACAGCTTGTTGTTGGGGAAGATCAGGAGAAGCAAGAATCTGTTATGTCAGATATTTCAGTGGAGTCTGGGATTGCAATTGCCTCAGATTCTAAAGATGCTGAGCCTGATGTTGTTATTCTTGATGAATGTTGTGAGAGATCCAATGGCTTCAATTTCAATTCAGATGTCAGGTTTTGTGCTCAAAAAAATGGAAGCAAGAATCAACCAGAGAACTCAGCTGGCTCTTTAATCAATTCGTGTTGCAGTACATCCAGAAATTTTGACATGTCATCAAGCACATGTTCTCTTACTCTACCTGACAAAGATCATTTAAACGAGCTGCAGTTGGAGCTTGAAGCAATTGAAACCCAGTATCAGCAATCCTTTCGTGAGCTTATGAAGATGAGGGAGGAAGCCATAGCAAATGTCAAAAGGAGATGGATAACAAGGAAGAAAATATCAGTCATGTGA 1845 0.4081 MNSETDDIGVVEKDPTSRYARYDEMLGKGAFKTVYKAFDEIDGIEVAWNQISVEDVMQSPRQLEKLYSEVHLLKSLKHENIIKSYNSWVDDKTMTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCYLHSHNPPIIHRDLKCDNIFVNGNNGKVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCMLEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDTEVKQFIEKCLVPASMRLSASELLEDPFLATESAKEINHDMLQLRNPHTKLVNPPTCEPHPMEIDSNFRLTSPGSSTTRIKETSQVSSFDLLRKTENNEFRLRGEKGAERAISLTLRIADAHGGARNIHFPFYIDSDTAISIAEEMVEHLELKDQDVAVIAELIHKMVVELVPDWKPSCENLSSGTDHLHRPSSEVQNPLRSSDFDTKAIYEDLVHSQLVVGEDQEKQESVMSDISVESGIAIASDSKDAEPDVVILDECCERSNGFNFNSDVRFCAQKNGSKNQPENSAGSLINSCCSTSRNFDMSSSTCSLTLPDKDHLNELQLELEAIETQYQQSFRELMKMREEAIANVKRRWITRKKISVM* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00262 614 Gene3D Transferase(Phosphotransferase) domain 1 103 285 - -
Rops10g00262 614 Coils Coil 569 596 - -
Rops10g00262 614 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 360 416 IPR024678 GO:0004674|GO:0005524
Rops10g00262 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 597 - -
Rops10g00262 614 FunFam Probable serine/threonine-protein kinase WNK1 4 101 - -
Rops10g00262 614 FunFam probable serine/threonine-protein kinase WNK9 103 282 - -
Rops10g00262 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Rops10g00262 614 Gene3D Phosphorylase Kinase; domain 1 4 101 - -
Rops10g00262 614 CDD STKc_WNK 18 277 - -
Rops10g00262 614 Gene3D - 358 443 - -
Rops10g00262 614 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00262 614 SMART serkin_6 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00262 614 SUPERFAMILY Protein kinase-like (PK-like) 23 323 IPR011009 -
Rops10g00262 614 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00262 Rops-Chr10 7940070 7943168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00262 3 613 MAP Kinase Kinase Kinase AT5G41990 52.373 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Rops10g00262 Pkinase 1.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00262 K08867 - gmx:100783717 936.791