Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00260 ATGGCTGGGTCTTTTACAACAACTCTAAGGGATACGCTCAAGACACTTTGTTGCAGGGATGGCTGGTCTTATGCCATTTTATGGCGCTTTCATCCACAAAGTTCCTTGTTGTTGACCATGGAAGATGCACACTGTGAAGATCAATTGGGAGAAGAGATTGTTAACATGCTTCCACAGGATGATTCAGGTTTGCATCAACAGTTCTCCTCCGGAATAAAGACAATTGTAGTGATATCTGTCAAACCATGGGGAGTGGTACAATTTGGATCCCAAAAGAAGATTTTGGAGACAGTGGAATTTTTGGAGCAAACTCAAATATTACTCACGGGGATGGAAGATGAGGATATTCTTAGTGCATTAACAAATACAGTTCTATCTCATTGTGAAAATTATGATCTAGATGGGTTGTTGGCTTCCATTTCTTCAGAAGATTGGAACCTCAAATCTGTTCATAGTGATGACCCTGAAGTGCTACTGGGAAACACTTATTCCTCTGCTAGTCCTGATGATTCCTTCCCTTCCATGTACAATATCCATGAAGAGGGGATCACTCCCATGCATGGATATTCCTCTTATCTTGGTGACCAATTGACACTTCCCATAGAGGCTCAAGATGTTGCAGATGTGCACTATAAAGATGCAGATGCATTTTCTTATGACCAACTTGCAGTTCAGCATTCAGAATTAACCTCGTTGTATAGTATTATGGAAAGACTGTTAGACCCAACAGGAACATTTCAAGACCAGTTGGGAAATTCATTGGATAACCAACATTCTGATCAATGTAATCTTGTGACAGAAGTTAATTTTCCAGATAGTTTAAGCACAGTTCTTGGACTCCCTGAAAACTTAGAGCCACTTGATACATTAGAAGAATTTTCTGAGTTCTCTATGGATGACCTCTGCCAGTTCTTAGCTCCTTCTCCAGATGATAGCATCTGTGGAACAGTGACAGCATTGGATAACACCCTTTCTCAGTCACAAGAATTTAATCCCACTTCTTTTGAGCTGGTTGGTAGTAGAGCCTTTGATAATTTTCCAGTCACATATCCAGCTATGCATAATTCCATCACAGTGACTGCATTGGATAACACCCTTTCTCAGTCACATGAATTTGATCCCACTTCTTTTGATCTGGTTGGTAGCAGTGCCTTTGATGATTTTCCAGTCACATATCCAGCTGTGCATAATTCCATCACAGATACACTGAACTTGGATGCTCAACAAACATCTACAGTTATGCATGGTTCTGAAAATAGTCTATTAGATAGCATGGGACTTGATTTGAGCTGTGACCAAGCTGATGAGTGGTGGGGCAGTATGGTTACACCATTAGTGAGTGCTGCTGCTACTGATACTACTTTCTCTGATTGCATATCAGAGTTGAATGTTCCTACACTAGGTGACTCTGGGAAGAGGTTATTCTCAGAGTTAAGAATTGAAGAGCTTTTGAATGGTGAATTGAGTTACAATTCTTTGTATAGTTCTAATTTTAGGGATCATTTATCAACCAGTAAACAGCTGAGTACAGAATATTCACCTGTGAATAGAAATTCAATACACTTGGTGCAACCAGTTTCAGAGTTGGACAACACACACAATCTTGTATATAAGAAAGAGATATTCCCAAGATTACAAGTAGGAGGCTTGTGGATTGGTGATAGACCTAGCAATACTATGAGGGTTGTTCCAGCACAACCTCAAAAGCCAGTGGAACCCAATAAGGTCACAAGAAAGAAGCCTAAGCCAGGGGAGACAACTCGACCTCGACCAAAAGATCGTCAGCAGATTCAAGACAGCATTCAAGTGTTGAGAGGGATCATCCCCAATTGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACTGTCAGATACATGCTATTCTTAATAAGCATCACTGAGTATGCAGACAAGCTGCAAGAACCCCATGAGCCTAAGCTCATTAGGCTGGCAAATGGAGATAGAGATGGCCTACAAGGTAGTGGTGATGTTACATGGGCATTTGAAGTGGCAGGTCAAACAATGGTATGCCCAATTATAGTTGAGGACATGGGCCCACCTGGCCATATGCTAATAGAGTTGCTTTGTGAGGAGCAGGGTTCCTTCCTTGAGATTGTGGACATCATTAGAGGGTTTGGGCTGAATGTTTTGAAGGGAAAGATGGAAAGAAGGGAGAATAAAATATGGGCACGCTTTATTGTTGAGGTAAATTGTTACTTCAAGTTAAAACACATTTGA 2241 0.4096 MAGSFTTTLRDTLKTLCCRDGWSYAILWRFHPQSSLLLTMEDAHCEDQLGEEIVNMLPQDDSGLHQQFSSGIKTIVVISVKPWGVVQFGSQKKILETVEFLEQTQILLTGMEDEDILSALTNTVLSHCENYDLDGLLASISSEDWNLKSVHSDDPEVLLGNTYSSASPDDSFPSMYNIHEEGITPMHGYSSYLGDQLTLPIEAQDVADVHYKDADAFSYDQLAVQHSELTSLYSIMERLLDPTGTFQDQLGNSLDNQHSDQCNLVTEVNFPDSLSTVLGLPENLEPLDTLEEFSEFSMDDLCQFLAPSPDDSICGTVTALDNTLSQSQEFNPTSFELVGSRAFDNFPVTYPAMHNSITVTALDNTLSQSHEFDPTSFDLVGSSAFDDFPVTYPAVHNSITDTLNLDAQQTSTVMHGSENSLLDSMGLDLSCDQADEWWGSMVTPLVSAAATDTTFSDCISELNVPTLGDSGKRLFSELRIEELLNGELSYNSLYSSNFRDHLSTSKQLSTEYSPVNRNSIHLVQPVSELDNTHNLVYKKEIFPRLQVGGLWIGDRPSNTMRVVPAQPQKPVEPNKVTRKKPKPGETTRPRPKDRQQIQDSIQVLRGIIPNCGKCSIDSLLDRTVRYMLFLISITEYADKLQEPHEPKLIRLANGDRDGLQGSGDVTWAFEVAGQTMVCPIIVEDMGPPGHMLIELLCEEQGSFLEIVDIIRGFGLNVLKGKMERRENKIWARFIVEVNCYFKLKHI* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00260 746 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 581 630 IPR011598 GO:0046983
Rops10g00260 746 MobiDBLite consensus disorder prediction 558 596 - -
Rops10g00260 746 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 48 IPR043561 GO:0003700|GO:0006355
Rops10g00260 746 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 594 636 IPR036638 GO:0046983
Rops10g00260 746 MobiDBLite consensus disorder prediction 573 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00260 Rops-Chr10 7903322 7908791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00260 421 738 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 36.795 1.41e-51 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00260 - - pvu:PHAVU_006G000400g 748.043