Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00258 ATGACGGAGGTGGCCAGATCAGTGGTGCATGAGGTTCTCGGAGAACGAGTCATCGACGTCGATGAACCAATCGTCGATTACATCATCAACGTCCTCGCCGACGAAGATTTCGATTTCGGAATCGACGGCGAAGGCACTTTCGAAGCCCTCGGAGAACTCCTCGTCGCCGCCGGTTGTGTCAACGACTTCCACGAGTGTCGTTCCGCATGTAGCAAAATCTCTGACAAGTTCGGGAAGCATGGTTTGGTGAAGGCGAAACCAACAGTTCGAAGCTTAGCGGCGCCGTTTCGAATGAACGAGGGAATGGACGAAGGTGAAGCTCCGAAGAAGAAGCCCGAACCTGTTGACGGTCCTCTTTTATCAGAACGCGACCGTTTAAAGCTCGAAAGGAGGAAGAGGAAAGACGAACGACAAAGAGAGGCACAGTATCAAATGCATTTGAAGGAGATGGAAGCGGCACGTGCGGGAATGCCTGTGGTGTGTGTTAGGCACGAGAATTTTGGTGGGCCCACCGTGAAGGACATTCATATGGAGAATTTCAATATCTCTGTTGGTGGTCGTGATCTCATTATTGATGGTTCTGTTACACTCTCCTTTGGAAGGCATTATGGGCTTGTTGGAAGAAACGGGACAGGGAAAACTACTTTCCTGAGGCACATGGCTATGCATGCCATTGATGGTGTTCCAAGGAATTGTCAGATATTGCATGTGGAGCAAGAGGTTGTTGGTGATGAAACAACGGCGTTGCAGTGTGTTCTCAATTCTGACATAGAGAGAACTCAGCTTCTACAGGAAGAAGCTGAATTACTCGCCAAACAGAGGGAATATGAGTACAATATTGAAGAGGGCAATGATAAAGTGAATGGAGGGGTTGAAAGAGACAGTATTTCACAAAAGATTGAGGAAATATACAAGAGGCTTGAATTCATTGATGCTTATTCTGCGGAGGCACGAGCAGCATCGATACTTGCAGGTCTGAGTTTCACTACTGAGATGCAGAAGAGAGCAACAAAAGCATTCTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATGTTGCTTCTTGATGAGCCTACGAACCATCTTGATCTTCACGCTGTCTTATGGCTTGAATCCTACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTACAAAACCAAAAACTGACTACATATAAAGGGAATTATGATATTTTTGAGAGGACTCGAGAAGAACAAATTAAAAACCAACAAAAGGCAGTAGAGGCAAATGAACGTTCAAGATCTCATATGCAGTCCTTCATTGACAAGTTCCGCTATAATGCAAAGAGGGCATCGCTTGTTCAATCTAGAATCAAGGCTTTGGAGCGAATGGGCCATGTAGATGAAATTGTTAATGATCCTGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGCCCACCGATAATAAGTTTCAGTGACGCATCATTTGGTTATCCTGGGGGGCCCATTCTATTTAAGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGCATTGGCAAATCTACTATACTAAAGTTAATTGCTGGGGAATTACAGCCAAGTTCAGGGACTGTCTTCCGTTCTGCTAAGGTTCGTATCGCAGTGTTCAGTCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACCGGAAATCTTGCACTTCAGCCCATGTATACTTTGTCAGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATTACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCATCCAATCACTTGGATTTGGATGCTGTCGAGGCACTAATTCAAGGTCTTGTGATGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCACCTCATCTCTGGAAGTGTGGAGGAGCTATGGGCTGTATCCGAAGGAAGAGTGGCACCATTCCATGGCAACTTCCATGATTATAAGAAGATACTCCAGTCATCTTAG 2145 0.4494 MTEVARSVVHEVLGERVIDVDEPIVDYIINVLADEDFDFGIDGEGTFEALGELLVAAGCVNDFHECRSACSKISDKFGKHGLVKAKPTVRSLAAPFRMNEGMDEGEAPKKKPEPVDGPLLSERDRLKLERRKRKDERQREAQYQMHLKEMEAARAGMPVVCVRHENFGGPTVKDIHMENFNISVGGRDLIIDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGVPRNCQILHVEQEVVGDETTALQCVLNSDIERTQLLQEEAELLAKQREYEYNIEEGNDKVNGGVERDSISQKIEEIYKRLEFIDAYSAEARAASILAGLSFTTEMQKRATKAFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDIFERTREEQIKNQQKAVEANERSRSHMQSFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWAVSEGRVAPFHGNFHDYKKILQSS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00258 714 Pfam ABC transporter 407 487 IPR032781 -
Rops10g00258 714 Pfam ABC transporter 194 368 IPR003439 GO:0005524
Rops10g00258 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 441 IPR027417 -
Rops10g00258 714 Gene3D - 126 449 IPR027417 -
Rops10g00258 714 Gene3D - 466 714 IPR027417 -
Rops10g00258 714 FunFam ATP-binding cassette sub-family F member 3 466 714 - -
Rops10g00258 714 SMART AAA_5 199 413 IPR003593 GO:0016887
Rops10g00258 714 SMART AAA_5 529 696 IPR003593 GO:0016887
Rops10g00258 714 MobiDBLite consensus disorder prediction 102 121 - -
Rops10g00258 714 Pfam ABC transporter 521 651 IPR003439 GO:0005524
Rops10g00258 714 ProSitePatterns ABC transporters family signature. 623 637 IPR017871 GO:0005524|GO:0016887
Rops10g00258 714 FunFam ABC transporter F family member 3 127 449 - -
Rops10g00258 714 CDD ABCF_EF-3 504 696 - -
Rops10g00258 714 MobiDBLite consensus disorder prediction 98 121 - -
Rops10g00258 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 504 713 IPR003439 GO:0005524
Rops10g00258 714 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 152 713 - -
Rops10g00258 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 436 IPR003439 GO:0005524
Rops10g00258 714 ProSitePatterns ABC transporters family signature. 340 354 IPR017871 GO:0005524|GO:0016887
Rops10g00258 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 703 IPR027417 -
Rops10g00258 714 CDD ABCF_EF-3 175 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00258 Rops-Chr10 7881277 7890112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00258 460 665 Calmodulin-binding Proteins AT2G36910 26.337 2.12e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00258 K06158 - gmx:547980 1264.98