Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00255 ATGATGGGGGTTCCACAAACAGCAACAAGCCCTCCTCCACACTTGTATCCTCAGGAACTTCAGCTCAAGCTTTACCAGGCCTTCATATTTTCAATTCCAATACTCTTTTCAATTATTCTCTTTCTTCTGTTTTACTTGTTCTACCTTAAGAGAAGGGCTTCTTCTCCACACTTACTTCCCATCACTGCCAATCCAACAACTACTTATCGTTACCGTTCCTCTCCTTGTCGTTTGGATCTGGCTGTGCAATTCCTGGACAAACTACCAAGAATTTTGTTTGATGAGGATTTGAGAGCAAGGGATTCACTATGTTGTGTTTGTTTAGGTGAATTTGAGATGAAAGAAGAGGTGCTACAGATTCCTTATTGCAAGCATGTGTTCCACATTGATTGCATACATCATTGGCTACAATCAAACTCCACTTGCCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCTCCTATTAATATTATATCAGACCCACCTCAACAAAGTGCTATCAATTCAAATTCTCCAATACAAATCCAATCATTGCCACCTCAAACTGAAGATGAAGCTGGTGCTTCCTCAAATACTGTGAATTTGTCAAGGGAATGA 618 0.4078 MMGVPQTATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSPHLLPITANPTTTYRYRSSPCRLDLAVQFLDKLPRILFDEDLRARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPPQQSAINSNSPIQIQSLPPQTEDEAGASSNTVNLSRE* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00255 205 PANTHER RING-H2 FINGER PROTEIN ATL16 17 178 IPR044600 GO:0016567|GO:0016740
Rops10g00255 205 SUPERFAMILY RING/U-box 83 157 - -
Rops10g00255 205 CDD RING-H2_EL5-like 104 146 - -
Rops10g00255 205 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Rops10g00255 205 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 73 151 - -
Rops10g00255 205 Pfam Ring finger domain 104 146 IPR001841 -
Rops10g00255 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 151 IPR013083 -
Rops10g00255 205 MobiDBLite consensus disorder prediction 166 205 - -
Rops10g00255 205 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00255 Rops-Chr10 7767378 7769873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00255 21 151 C3H Transcription Factor Family AT4G10150 41.606 8.58e-33 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00255 K19039 - gmx:100813129 312.768