Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00232 ATGGGTCGTCCACCCAGTAATGGAGGCCCCGCCTTCCGCTTCACTCAGCCAGAGGTTGCAGAAATGGAAACTATTCTTCAAGAACACAACAATGCAATGCCAGCACGTGATGTTCTTGCAGCTCTTGCAGAGAAGTTCAGTGAATCACCAGACCGTAAAGGCAAGATTACAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCGATAAGGGCAAAATCAAGTAAGACTCCTGGAAAGTTAAATATCACACCTATGCCTCGAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTACGATGTGGCTAGCTTTCTATCACACAGATATTTGGAGACCAGTGACCCGGAAGTGCTGATACGGTTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGGTTAATGTTCGAAGGAATGTCAGGCCACGCTCGCTGCCATGTGAATCATCAGAATGTGTTGCAGTCCTCCCTGGAGATCTCATACTTTGTTTTCAGGAAGGTAAAGAGCAAGCCCTCTACTTTGATGCCCATGTCCTTGATGCCCAAAGACGGAGGCATGATGTAAGAGGCTGTCGATGTAGATTTTTGGTTCGTTATGATCATGATCAGTCAGAGGAAATCGTGCCACTTAGGAAGGTTTGTCGTAGGCCTGAAACTGATTACAGATTACAGCCACTTCATGAAGCTCACGAGAAGGTCCAAAGCTCCCAGCGAGTTTCCACGAGTGAGGTAAGGAGGGAACCATATCACATGATGGAGTTTGATACGCAAGCAGGTGGTGAGCTGCATTGGGTCTCGTCCTTGTACGATGGCTCTTGCAAGAAGCAGTGTTGA 852 0.4695 MGRPPSNGGPAFRFTQPEVAEMETILQEHNNAMPARDVLAALAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRVMEFEAKSGRDGAWYDVASFLSHRYLETSDPEVLIRFAGFGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQPLHEAHEKVQSSQRVSTSEVRREPYHMMEFDTQAGGELHWVSSLYDGSCKKQC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00232 283 SMART HOX_1 7 81 IPR001356 GO:0003677
Rops10g00232 283 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Rops10g00232 283 Gene3D - 153 225 - -
Rops10g00232 283 Pfam SAWADEE domain 94 220 IPR032001 GO:0003682
Rops10g00232 283 Gene3D - 92 152 - -
Rops10g00232 283 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Rops10g00232 283 CDD homeodomain 13 75 IPR001356 GO:0003677
Rops10g00232 283 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 248 IPR039276 -
Rops10g00232 283 Gene3D - 10 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00232 Rops-Chr10 7108334 7109279 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops10g00232 SAWADEE 5.6e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00232 - - gmx:100783895 443.736