Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00213 ATGCCTTCTATCTTTCTCGATTATATCCCATGCTTGAGGGGACTCGATTTGGATGGTCACGAAGCCAAGGTGAAAGAGGCTGTAACAATTGTGAACAAGTATCATTATCCCATCATTGAACAGAGAATCAAACAGTGGAATGATGGATCAAAGATTGAAGTTGAGGATTTCCTTGATATTCTAATCTCACTAAAAGATGCCGACAATAACCCAATATTGACACCAGAGGAAATCAAAGCTCAAATTATAGAATTGATGATTGCGGCAGTGGATAACCCATCAAATGCAATTGAATGGGCACTTGCAGAAATGATAAACCAGCCCGAGTTGCTTCAACGAGCTATCGAAGAATTGGACAATGTGGTAGGGAAAGAGAGGCTGGTCCAAGAATCAGATATTCCTAAACTCAACTATGTGAAGGCTTGCGCAAGAGAAGCTTTTCGCCTTCATCCCATTGTGCCTTTTAATGTTCCTCATGTTTCTATGAAAGACACAATTGTTGCCAACTATCTAATTCCAAAGGGTAGCCATGTATTGTTAAGTAGAAGAGAACTTGGTCGAAACCCAAAAGTTTGGAATGAACCGAACAAGTTCAAACCTGAACGTCACCTCAAGAATGATGGTTCTGAGGTGGTTTTAACAGAGCCAGATTTAAGGTTCATATCATTTACTACAGGAAGGCGTGGTTGTCCTGGAGTCAAGCTTGGTACCACAATGACTGCTCTCATACTTCATTATCGTTCTCTCTTGTGCGTGTTCTTCGCCATAGCACAGTCTCCAGCAACGTCTCCCAAGGTTGTTGCTGCTGCTCCACCAAAGGCGGAGACTCTTTTGCAAACACAGCCTCCGACGCCGTCTTCTTCGAAGACTCCGCCGGTCGTTGCTCCTTCCGATGTGAGCTATCTGCCTTCTCCTACTCCATCGTCGGAGTCATCTCCATCACCTTCTGTGTCTCCTTCATCAATCTCTTCCCCTCCCTCTGAGATTTTGCTCTCGTAA 999 0.4404 MPSIFLDYIPCLRGLDLDGHEAKVKEAVTIVNKYHYPIIEQRIKQWNDGSKIEVEDFLDILISLKDADNNPILTPEEIKAQIIELMIAAVDNPSNAIEWALAEMINQPELLQRAIEELDNVVGKERLVQESDIPKLNYVKACAREAFRLHPIVPFNVPHVSMKDTIVANYLIPKGSHVLLSRRELGRNPKVWNEPNKFKPERHLKNDGSEVVLTEPDLRFISFTTGRRGCPGVKLGTTMTALILHYRSLLCVFFAIAQSPATSPKVVAAAPPKAETLLQTQPPTPSSSKTPPVVAPSDVSYLPSPTPSSESSPSPSVSPSSISSPPSEILLS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00213 332 Pfam Cytochrome P450 7 245 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 Gene3D Cytochrome P450 1 258 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 PANTHER CYTOCHROME P450 703A2-RELATED-RELATED 6 245 - -
Rops10g00213 332 MobiDBLite consensus disorder prediction 301 332 - -
Rops10g00213 332 MobiDBLite consensus disorder prediction 276 332 - -
Rops10g00213 332 SUPERFAMILY Cytochrome P450 4 246 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 PRINTS E-class P450 group I signature 220 230 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 PRINTS E-class P450 group I signature 77 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 PRINTS E-class P450 group I signature 97 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 PRINTS E-class P450 group I signature 140 158 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00213 332 PRINTS E-class P450 group I signature 181 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00213 Rops-Chr10 6397655 6405481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00213 7 244 Cytochrome P450 AT4G39950 65.126 1.73e-111 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00213 - K12153 pvu:PHAVU_006G0788000 397.512