Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00194 ATGGACAAGGCAGGTGCTGAACTTCAAAGTGATGATGATTCAGGTTCAATGGTGCCAGATCCTGCTCATCTTCATCATCAGACATATGGTGGAAATGGAAAAGATGACCACACTTCCTTGATTCCACTGTCCAGAAGACATAGTCTTTCCTCTCTGCAAATACCAGCAAGGTCACTAGAAAGTGCATTGTCTTCTTTTACCAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTACCCCCAAGGCCAAATTCTGCCAAAGTGAAGTCATCTATGAGAAATTTACTTTCTGAGAGGAGCTTTAGGACTAAGACTTGTTCACAAGATAGTGAAAGGACAGTTCTGATTGTTCCTGATACTTTACCATCAGATGGTCCTCTTGATAAGCCTTCAACTTCAAGGACCCTTTCCCTTAATAGGATTTTGTTCCCTTCATCAACAAAAGCAGCACATTCATTACCAGTCACTCCAATTGCAAATTCAGACATTGTACATGGAAGACATCTAGGGAGTGATTCTGATTCAAATAAAATAAAAGTAAATCAGCATATGACTCGATCATTTTCAGTTCCAGTTAATGTCAAAGCCACTAATTTAAGGCCTACAGATTCTAGGCGCCTGATTCGTGTAATTTCAGCAAGACCACATCTAGCAACTATTGATGGCATTTCAACTCACAATGCTTCAGTGTCAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAGGAAGAAGCAGTGTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAACACTCTTAGGATGGACTGCAGTTGTAAAGGAGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACCTGTGACGTCTGCAAGCAGGATGTCCAAAACCTTCCAGTAACACTCTTGAAAATTTCTAATCCTATAACTGTTGCTAGGCAGCCATTGAATGCACCACAGCAAAGAGAAATAACTTACTACAGGATCTGGCAGGATGTGCCGGTACTCATCTTGGTCAGCATGCTTGCATACTTCTGCTTTCTAGAGGAACTGCTGGTTTCAGATTTGGGAACTCGTGCTCTTGCCGTTTCATTACCTTTCTCCTGTGTATTAGGTCCCCTCTCATCTATGATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCAATAGTCATCCTGTTTGCTCACATATTCTATTCTATACTTAATGTTAATGCGATTCTTTCAGTCCTTCTTTCCTCATTCACTGGATTTGGGATTTCAATCAGCATGAATTCTCTCCTAACGGAATATGTTAGATGGAGAACAAGTAGACAGATTCAATCTTCTAATCAGAATGTTAACACAACACAGCAGCAGCAAGAACCTCAATGA 1425 0.4154 MDKAGAELQSDDDSGSMVPDPAHLHHQTYGGNGKDDHTSLIPLSRRHSLSSLQIPARSLESALSSFTKTDGPTLSSPGSTRGLPPRPNSAKVKSSMRNLLSERSFRTKTCSQDSERTVLIVPDTLPSDGPLDKPSTSRTLSLNRILFPSSTKAAHSLPVTPIANSDIVHGRHLGSDSDSNKIKVNQHMTRSFSVPVNVKATNLRPTDSRRLIRVISARPHLATIDGISTHNASVSEIVIEDASEDIPEEEAVCRICLVELGEGGNTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVQNLPVTLLKISNPITVARQPLNAPQQREITYYRIWQDVPVLILVSMLAYFCFLEELLVSDLGTRALAVSLPFSCVLGPLSSMIASTMVSRSYIWAYACFQFAIVILFAHIFYSILNVNAILSVLLSSFTGFGISISMNSLLTEYVRWRTSRQIQSSNQNVNTTQQQQEPQ* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00194 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 308 IPR013083 -
Rops10g00194 474 CDD RING_CH-C4HC3_MARCH 253 301 - -
Rops10g00194 474 ProSiteProfiles Zinc finger RING-CH-type profile. 245 307 IPR011016 GO:0008270
Rops10g00194 474 MobiDBLite consensus disorder prediction 66 93 - -
Rops10g00194 474 MobiDBLite consensus disorder prediction 66 83 - -
Rops10g00194 474 Pfam RING-variant domain 253 300 IPR011016 GO:0008270
Rops10g00194 474 SMART ringv_2 252 301 IPR011016 GO:0008270
Rops10g00194 474 PANTHER OS02G0165000 PROTEIN 39 471 - -
Rops10g00194 474 MobiDBLite consensus disorder prediction 1 40 - -
Rops10g00194 474 SUPERFAMILY RING/U-box 249 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00194 Rops-Chr10 6030048 6035731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00194 247 307 C3H Transcription Factor Family AT2G37950 46.875 2.45e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00194 - - pvu:PHAVU_006G002500g 691.419