Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00183 ATGGCAAGGCTTGCCCTAGCCAATCTCTTGATCCTTCTCTTGAACTTGAGTACCTTGCTCAATGTTCTTGCTTGTCCTAACTGTCCATACCCAACTCCTAAGACTCCAAAATACCCTCCTAAGGTGAAATCACCAATTTACAAACCACCAAAGCACCCTCCTATAGTGAAGCCACCAGTTCACAAACCACCAAAGCATGGCAAGCCACCCTGTCCACCACCCCAGTCATCACCAAAACCACCCCATGTTCCCAAACCTCCTCATTATCCACCCTATGTGCCTAAACCACCAGTTGTGAAACCTCCTTATGTTCCTAAGCCACCAGTGACACCACCCTATGTTCCTAAACCTCCTCATTATCCTCCTTATGTGCCTAAACCACCAGTTGTTAAACCACCGTATGTGCCTAAACCACCAGTTGTTAAACCTCCTTATGTTCCTAAGCCACCAGTGACACCACCGTATGTTCCTAAACCTCCTCATTATCCTCCTTATGTTCCTAAGCCACCAGTAACACCACCCTATGTTCCTAAACCTCCTCATTATCCTCCTTATGTTCCTAAGCCACCAGTGACACCACCCTATGTTCCTAAACCTCCTCATTATCCTCCTTATGTGCCTAAACCACCAGTTGTGAAACCTCCCTATGTTCCTAAGCCACCGGTTGTACCAGTGACACCCCCATATGTGCCAAAGCCACCAGTGGTACCAGTGACACCCCCATATGTGCCAAAGCCACCAGTGGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCGGTTGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCAGTTGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCAGTTGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCAGTTGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCAGTGGTACCAGTGACACCCCCTTATGTGCCTAAGCCACCAGTGGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCAGTGGTACCAGTGACACCCCCTTATGTGCCAAAGCCACCAGTGGTAAGCCCACCTTATGTACCAGTGCCACCCGTTGTACCAGTGACACCACCTTATGTGCCAAAGCCACCAGTTGTACCAGTGACACCACCTTATGTGCCAAAGCCACCCGTTGTACCAGTGACACCACCTTATGTGCCAAATCCACCAGTGGTAACCCCACCATATGTACCAGTGCCACCAGTTGTACCATCACCACCTACTGTGACACCACCTACCCCACCAAGCCCTCCAACTGGAACACCATGTCCACCACCACCACCAACAGTGGTGCCCTATCCTCCACCAGCACAGCCAACATGCCCCATTGACACCTTAAAGTTGGGTGCATGTGTTGATGTTCTAGGTGGCCTCATACATATTGGAATTGGAGGCAGTGCTAAACAAACATGTTGTCCAGTGCTTCAAGGGCTTGCGGACTTGGATGCTGCTAAGGATTTACATGTCCAGCACAGTAATATATTTACAAAGGAATTGCATCACTTTTGCACGGAATAA 1551 0.501 MARLALANLLILLLNLSTLLNVLACPNCPYPTPKTPKYPPKVKSPIYKPPKHPPIVKPPVHKPPKHGKPPCPPPQSSPKPPHVPKPPHYPPYVPKPPVVKPPYVPKPPVTPPYVPKPPHYPPYVPKPPVVKPPYVPKPPVVKPPYVPKPPVTPPYVPKPPHYPPYVPKPPVTPPYVPKPPHYPPYVPKPPVTPPYVPKPPHYPPYVPKPPVVKPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVSPPYVPVPPVVPVTPPYVPKPPVVPVTPPYVPKPPVVPVTPPYVPNPPVVTPPYVPVPPVVPSPPTVTPPTPPSPPTGTPCPPPPPTVVPYPPPAQPTCPIDTLKLGACVDVLGGLIHIGIGGSAKQTCCPVLQGLADLDAAKDLHVQHSNIFTKELHHFCTE* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00183 516 MobiDBLite consensus disorder prediction 416 438 - -
Rops10g00183 516 Pfam Hydrophobic seed protein 451 496 IPR027923 -
Rops10g00183 516 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 454 496 IPR036312 -
Rops10g00183 516 MobiDBLite consensus disorder prediction 39 89 - -
Rops10g00183 516 MobiDBLite consensus disorder prediction 39 57 - -
Rops10g00183 516 MobiDBLite consensus disorder prediction 65 89 - -
Rops10g00183 516 PRINTS Proline rich extensin signature 24 45 - -
Rops10g00183 516 PRINTS Proline rich extensin signature 68 85 - -
Rops10g00183 516 PRINTS Proline rich extensin signature 87 112 - -
Rops10g00183 516 PRINTS Proline rich extensin signature 48 64 - -
Rops10g00183 516 Gene3D - 451 500 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00183 Rops-Chr10 5797181 5799725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00183 209 356 NAC Transcription Factor Family AT5G09330 20.270 6.72e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00183 - - lja:Lj0g3v0200859.1 95.9005