Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00169 ATGAGAATCAAAACCACCGTTGGTGGACGAAGGCGTACGCCCACCGCCGCCGTTTGCCCCCTCTCCGCCATTCCTTTCCTCTCCACCACCCAGGACGAACAAAACGCAACCTTGTACGACACAGAGAGCGACCACGACGATGACAATCCACACGTTCCGGTACCCGATTTCACCAACCACCCTCCCGAACCCGAACCTGAATCCGAACCTCTAGATTTATTAGACGAGAACATTTGCATAAGCTGCAACAAAGACGGGGGAACTCTATTAATTTGCAGCGAAAGCGGTTGCCCCGTTTCCGTCCACGCCAGCTGCATCGGCTCCGAACCTAAATTCGATGATTCCAGAAACTTCTACTGCCCCTATTGCTGGTACAAACGCACAGTGAACAAATGTCGAGAGCTGAAGGAAAAGGCCGTTATAGCAAAGAAAGCCTTGTCAAGCTTCTTGGATAAACCCCAAACGGTGCGTTTAAATGACGAGAAAAAAGAGGAAAAGCCCCTTCCTGAAGAACCGGCATTGCATGAACATAAAAACCCGAACCAGGATGAACCTAACGTTTCGGAACCGCTTGAAATGGCGCGTAACGATAATGGTAAAGGAAAGGTGTCTGTTGCAACGGGTAGTTCAGTGAGTGAAACTAAAGATTCGGATTCTGATGTTATCTCGGTGAAGAAAGGCCGTGCCAAAAGAAAGGTTCAAAAGAAGGTTGCTTCTGAGAAAAAACCGTTGTCACGGGAGCATAAAACTGATGAATTAGAAGAGGAAGTTACCAGTTCTGGAACTTTAAGACAACCACAGAGTTTTCCTAACACGAAGCGGACTACTTTGCTGACCGGAAAGCGTAAGAGATTGCATTGGACTGTTGAAGAAGAGAGAGCTCTGAAGGAAGGAGTGTTAAAGTTTTCTGTGGAGAATCAGAAGATCCCTTGGAGGAAAATTTTAGAATTTGGTTATCGTGTATTTGATGAGACTCGTACTCCTGTTGATCTCAAGGACAAATGGAAGAACATTTCCTCCAAGGAAGGATGCAAGTAG 1038 0.4663 MRIKTTVGGRRRTPTAAVCPLSAIPFLSTTQDEQNATLYDTESDHDDDNPHVPVPDFTNHPPEPEPESEPLDLLDENICISCNKDGGTLLICSESGCPVSVHASCIGSEPKFDDSRNFYCPYCWYKRTVNKCRELKEKAVIAKKALSSFLDKPQTVRLNDEKKEEKPLPEEPALHEHKNPNQDEPNVSEPLEMARNDNGKGKVSVATGSSVSETKDSDSDVISVKKGRAKRKVQKKVASEKKPLSREHKTDELEEEVTSSGTLRQPQSFPNTKRTTLLTGKRKRLHWTVEEERALKEGVLKFSVENQKIPWRKILEFGYRVFDETRTPVDLKDKWKNISSKEGCK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00169 345 MobiDBLite consensus disorder prediction 156 277 - -
Rops10g00169 345 ProSiteProfiles Myb-like domain profile. 279 339 IPR001005 -
Rops10g00169 345 MobiDBLite consensus disorder prediction 259 276 - -
Rops10g00169 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Rops10g00169 345 Gene3D - 278 341 - -
Rops10g00169 345 MobiDBLite consensus disorder prediction 40 70 - -
Rops10g00169 345 SUPERFAMILY FYVE/PHD zinc finger 69 127 IPR011011 -
Rops10g00169 345 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 36 342 - -
Rops10g00169 345 Pfam Myb-like DNA-binding domain 286 337 IPR001005 -
Rops10g00169 345 MobiDBLite consensus disorder prediction 238 258 - -
Rops10g00169 345 SUPERFAMILY Homeodomain-like 282 339 IPR009057 -
Rops10g00169 345 CDD SANT_TRF 287 338 - -
Rops10g00169 345 MobiDBLite consensus disorder prediction 202 217 - -
Rops10g00169 345 ProSitePatterns Zinc finger PHD-type signature. 79 123 IPR019786 -
Rops10g00169 345 MobiDBLite consensus disorder prediction 156 183 - -
Rops10g00169 345 SMART sant 283 341 IPR001005 -
Rops10g00169 345 SMART PHD_3 78 124 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00169 284 339 Single Myb Histone (SMH) Gene Family AT3G49850 50.877 1.43e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00169 - - mtr:11429054 337.421