Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00168 ATGAAGAGGGCTATCTCGATGGGATCCTTAGAGGGAGCATGTGTGATACAACTTGAAAATGCAAGCCTGCTTAGTCCTTCTTCCCAGAAAAAAAATCTACCCTTTGAAGAGGATTCACCAATTGATCATGATTGTGGGAAGTTCTCACAAGATGTAATAAGAAGTAAGGTGTTTAGTAGCATAAAAGCTGTAGTCCTCTCAACCAAGATAAACTTACTCTTACCTTTTGGCCCCATGGCAATTGTGGTTGATAAATTGTTTGATAGTCATGGTTGGGTCTTTCTTTTCAGCTTATTAGGCATTATACCCTTGGCAGAGCGTTTGGGTTATGCAACGGAGCAACTAGCTTTCTTTACTGGACCTGCAGTTGGTGGTCTTTTATATGCCACATTTGGAAATGCAACAGAGTTAATTATATCAATTCATGCCCTCAAAAGTGGCTTGATTCGTCTTGTTCAACAATCACTACTAGGCTCAATTTTGTCAAACCTGTTGCTAGTGCTTGGATGTGCATGCTTTGCTGGTGGACTAGTATTTTCCAAGAGAGAACAAAAATTGACCTTAACCAATCATCAGGCAGATGCCACTCTGGATTTCGGATTATTATTAATGGCGGTAATGGGCCTGTTATTTCCAGCAGTCCTCCATGCTACACACACAGAATTACAACATGGGAAATCTCAGTTATCTCTTTCAAGATTTACTAGTTGCATTATGCTTGTGGCTTATGCTTCCTATATAGTGTATCAAGTGAAGATTCAGAAGAATTTACAAGTTTCAGACAATGAGGATAAGGATCTCAATGACGATACTTCAGATGATGTAGAAGCTCCTGAAATTTCTATGTGGGAATCTATGATATGGCTATCAATCTTAACGGGAGGTATATCAGTCTTGTCAAAATACTTGGTTAAGACCATAGAGGGGGCATCAAAAGAGTTTAAAATGCCAGTGGCATTTCTTAGTGTTATTCTTCTTCCTATAGTTGGGAATGCTGCAGAACATTTTGGATCTGTTATGTTTGCTGTCAAGGACAAACTTGACATATCTCTGGGAGTGGCTGTAGGATCTTCATTACAAATATCAATGTTTGTGATTCCTTTTTGTGTCGTTGTTGGATGGATAATTGAATGTCCTATGGACTTGAATTTTCAACCTTTCGAGACAACAACAATTTTCATGACTGTTATCATAGTTGCCTTCATGCTGCACAATGGAACTTCCAACTACTTCAAAGGGATAATGCTCATTCTTTGCTATTTGATAATTTCTGCAAGTTTTTATGTACATGTTGATCCTATATCAGTTGTAGATAATCCCTCAACTGCTCGTCCGTAA 1338 0.3857 MKRAISMGSLEGACVIQLENASLLSPSSQKKNLPFEEDSPIDHDCGKFSQDVIRSKVFSSIKAVVLSTKINLLLPFGPMAIVVDKLFDSHGWVFLFSLLGIIPLAERLGYATEQLAFFTGPAVGGLLYATFGNATELIISIHALKSGLIRLVQQSLLGSILSNLLLVLGCACFAGGLVFSKREQKLTLTNHQADATLDFGLLLMAVMGLLFPAVLHATHTELQHGKSQLSLSRFTSCIMLVAYASYIVYQVKIQKNLQVSDNEDKDLNDDTSDDVEAPEISMWESMIWLSILTGGISVLSKYLVKTIEGASKEFKMPVAFLSVILLPIVGNAAEHFGSVMFAVKDKLDISLGVAVGSSLQISMFVIPFCVVVGWIIECPMDLNFQPFETTTIFMTVIIVAFMLHNGTSNYFKGIMLILCYLIISASFYVHVDPISVVDNPSTARP* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00168 445 Gene3D - 121 262 IPR044880 -
Rops10g00168 445 Gene3D - 271 429 IPR044880 -
Rops10g00168 445 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 52 433 IPR004713 GO:0006812|GO:0008324|GO:0016020
Rops10g00168 445 NCBIfam calcium/proton exchanger 57 427 - -
Rops10g00168 445 FunFam Vacuolar cation/proton exchanger 273 429 - -
Rops10g00168 445 FunFam Vacuolar cation/proton exchanger 121 264 - -
Rops10g00168 445 NCBIfam calcium/proton exchanger 73 428 IPR004798 GO:0006816|GO:0015369
Rops10g00168 445 Pfam Sodium/calcium exchanger protein 288 424 IPR004837 GO:0016020|GO:0055085
Rops10g00168 445 Pfam Sodium/calcium exchanger protein 92 251 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00168 Rops-Chr10 5310983 5317172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00168 4 433 Antiporters AT1G55730 60.508 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00168 K07300 - jre:109000743 560.066