Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00150 ATGGGCCTTTCAAGTCTCCCAGCACCATCTGAAGGAATGTTATGTGTACTTCTTGTGAACACTGCCATGTCAATATCCATATTCAAAGGCATTGTTAGAACAATCCTTCACATTGTTGGTATCCGTGTTTCATCATCCTCCTCCAATTCTTCTCCTTCACCTGATATCTCTCAAAACCCACCTGAGTCATTTGAATTCCATCTAAGTCCCTCAGAGAGTTACATTGAAGAGTTCAGAGCCAGGACACCAACTCTTAGATATGACAGTGTGTGTAGCTACAAAGAACCTGAACATGAGTGCTCAGTATGTCTCACTCAATTTGAACCAGAATCAGAGATAAACCGTTTATCTTGTGGCCATGTTTTCCATAAATCATGCTTGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGATGCATCATGCATTTGGTGA 468 0.4188 MGLSSLPAPSEGMLCVLLVNTAMSISIFKGIVRTILHIVGIRVSSSSSNSSPSPDISQNPPESFEFHLSPSESYIEEFRARTPTLRYDSVCSYKEPEHECSVCLTQFEPESEINRLSCGHVFHKSCLEKWLDYWNITCPLCRTPLMPEDDASCIW* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00150 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 147 IPR013083 -
Rops10g00150 155 PANTHER - 1 150 IPR044249 -
Rops10g00150 155 SMART ring_2 100 141 IPR001841 -
Rops10g00150 155 Pfam Ring finger domain 99 142 IPR001841 -
Rops10g00150 155 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Rops10g00150 155 SUPERFAMILY RING/U-box 93 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00150 Rops-Chr10 4633917 4635720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00150 1 149 C3H Transcription Factor Family AT2G04240 64.935 6.78e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00150 K16285 - gmx:100786803 269.24