Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00149 ATGGTGTACTGCCGCTCTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTGCATTCTGCTAATGCCCTTTCTAGACGGCATTCAAGGACCCTTTTGTGTGAGAGATGCCGTTCACAACCTGCTTTTGTAAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTGGGTCATGGTACCTCTACATCTTCTTCAGCACATAAGAGGCAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCAGCGGAACTGTCTTCAATATGGTCATTTGTGTTAGATATCCCTTCTATAAGTGAATCTACATGTGAACAAGAATTAGGTTTGATGAGTATTAATGAGAACAGCAACAAGAGTGCTTGGGTTCTTCCAGAAAACCAGAATGTGTTTGGTTCAGATCAAGTTACTGATTTACCTGGTTTGGATAAGTCTTGGGCTGGTACATCTTTGATGCCCGAGACAAACTCAGAACCTCGTATTCTTGACCAGCCAGCTGGACCTGCCAATGAATGTATGCCAAAGTTATACTGTCCATCTACCAAATGCCCTGCACTATGTGAAGATGATAATCTTTATGGCGATTTCAACATGGATGAAATGGATATAAATCTTGAAAACTACGATGATCTTTTCAGTGTGACCCTTAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGAGACAAAGGACGTGTCAGCTGGAGATTCCAATTGTCAGGATGCTGTTGCTGCTGAGGGGTCATCAGTTGGACTGGTCAATACAATGCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCCATATTGAGTACTAAAACTGAACCAATTCTTTGTTTTACGGGAAGACAAGCCCAATCGAACCTTTCTTTTTCTGGCATTACCGGAGAGAGCAGTGCTGGAGACTATCAAGATTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGCTTTCGCCTTGTCCTGAGAATAACATACAATCTGCTAACCGCAGCAATGCTGTTATGCGTTATAAGGAGAAGAAGAAGACACGCAAGTTCGACAAAAAAGTGAGGTATGCCTCCCGCAAGGCAAGGGCTGATGTCAGAAGGCGCGAGAAGGGCCGGTTTGTCAAAGCTGGTGACGCCTATGATTATGACCCTTTGAGCCCAACCAGAAGCTACTGA 1197 0.4378 MVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCRSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSAHKRQTINCYSGCPSAAELSSIWSFVLDIPSISESTCEQELGLMSINENSNKSAWVLPENQNVFGSDQVTDLPGLDKSWAGTSLMPETNSEPRILDQPAGPANECMPKLYCPSTKCPALCEDDNLYGDFNMDEMDINLENYDDLFSVTLSHSEELFENGGIDSLFETKDVSAGDSNCQDAVAAEGSSVGLVNTMQPACSNAASADSILSTKTEPILCFTGRQAQSNLSFSGITGESSAGDYQDCGASSMLLMGEPPWLSPCPENNIQSANRSNAVMRYKEKKKTRKFDKKVRYASRKARADVRRREKGRFVKAGDAYDYDPLSPTRSY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00149 398 Pfam CCT motif 341 383 IPR010402 GO:0005515
Rops10g00149 398 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Rops10g00149 398 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 386 - -
Rops10g00149 398 ProSiteProfiles Zinc finger B-box type profile. 30 77 IPR000315 GO:0008270
Rops10g00149 398 CDD Bbox1_BBX-like 2 34 - -
Rops10g00149 398 CDD Bbox1_BBX-like 34 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00149 Rops-Chr10 4559268 4567422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00149 1 398 C2C2-CO-like Transcription Factor Family AT3G07650 55.718 1.28e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops10g00149 CCT 2.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00149 - - gmx:100796748 699.508