Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00148 ATGAGATTGCAGCTTGAGATTGTGAAGAAGGGTGTTCATATTGTCGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTTAAAGCTCAAAGGCAGACTCTTTTATTTTCTGCCACTATGCCAACCAAAATTCAGAACTTTGCTAGAAGCGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCAGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTAATATTCTGTGAGAACAAGGCTGATGGGGATGACATTCATGAATATCTTCTCTTGAAAGGTGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTGCAGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGTTTGAATTTTCCTGATATTCAGCATGTCATTAACTATGACATGCCGGCTGAAATTGAAAATTATGTCCATAGGATTGGACGGACTGGAAGATGTGGCAAGACTGGTATAGCGACAACATTTATAAACAAGAATCAAAGTGAGACAACATTACTTGATTTGAAACACCTCTTGCAAGAAGCAAAACAAAGGATTCCCCCAGTTTTGGCCGAGCTGAATGATCCAATGGAAGATAATGAGGAAATCACAGATAAAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAACTAGATCAGAAGAGCATGGCAATAGCAAATAATAAAAAAGATTATTTTGGATCTGGAGGTTACAGAGAGGAAATTTGA 972 0.4033 MRLQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADGDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLNFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEEITDKSGVKGCAYCGGLGHRIRDCPKLDQKSMAIANNKKDYFGSGGYREEI* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00148 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Rops10g00148 323 Pfam Helicase conserved C-terminal domain 118 225 IPR001650 -
Rops10g00148 323 Gene3D - 1 102 IPR027417 -
Rops10g00148 323 SMART c2hcfinal6 282 298 IPR001878 GO:0003676|GO:0008270
Rops10g00148 323 FunFam Probable ATP-dependent RNA helicase DDX41 104 266 - -
Rops10g00148 323 ProSiteProfiles Zinc finger CCHC-type profile. 283 298 IPR001878 GO:0003676|GO:0008270
Rops10g00148 323 Gene3D - 268 308 - -
Rops10g00148 323 Pfam Zinc knuckle 282 298 IPR001878 GO:0003676|GO:0008270
Rops10g00148 323 Coils Coil 236 256 - -
Rops10g00148 323 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 265 - -
Rops10g00148 323 SUPERFAMILY Retrovirus zinc finger-like domains 282 302 IPR036875 GO:0003676|GO:0008270
Rops10g00148 323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 105 265 IPR001650 -
Rops10g00148 323 SMART helicmild6 144 225 IPR001650 -
Rops10g00148 323 Gene3D - 104 266 IPR027417 -
Rops10g00148 323 CDD SF2_C_DEAD 106 234 - -
Rops10g00148 323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 94 IPR014001 -
Rops10g00148 323 Pfam DEAD/DEAH box helicase 2 82 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00148 Rops-Chr10 4540548 4542469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00148 7 260 Eukaryotic Initiation Factors Gene Family AT3G13920 31.907 3.10e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00148 K13116 - gmx:100819984 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00148 10 4540548 4542469 Rops10g00148 10 4540548 4542469 ECH