Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00146 ATGGCTTCCAGAAAGATCGATTCCGGCGACGGTGCCAGTCCTGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCTTAGACACGTTTGTGAAGTACTTTGAGAAATACGGAGAGATAACGGATTCTGTTATCATGAAGGACCGACATACGGGTCGACCCAGGGGATTCGGGTTCATCACTTACGCGGATCCTTCCGTCGTTGACCAAGTCATTCAGGAGAATCACATCATCAATGGCAAGCAGGTTGAGATCAAGAGAACTATTCCGAAGGGTTCATCACAAGCTAATGACTTCAAAACTAAGAAGATTTTTGTCGGTGGTATTCCAACATCAGTATCTGAAGATGAGCTAAAGAACTTTTTCTCTAAGTATGGGAAAGTTGTGGAGCATGAGATCATACGCGACCACACCACGAAAAGATCCCGGGGATTTGGGTTTATAGTTTTTGACAATGAAAAGGTTGTTGACAATATGTTGACAGATGGAAACATGATTGACATGGCTGGTACTCAGGTCGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGGTTCCCTTCCTCCATTTGCTAGAGACTCTAGGGCACATTCTTACAATGATGGTTTCGGTGGATTTGGCGATTCTTATGGAAGTTTTGCCGGTGGCAGTTATGGCCCTGCATCTTATAGGTCACTTGGAGGTTTTGGTGGTAGGCTTGGCGATTATGGTGGGTATGGTGGTGGAGATGACTTTAGTGGTGGTTTTGGGGGCTATGGTGCTGGTGCTGGTGGCTATGCTGGCTATCGAGGAGAATCATCATTTGGCTACTCTAGTCGCTATGGATCCTACATGGGGGGTCTTGGTGGTGGATATGGTAGTGGTGGGTTAGGTGCATATGGACGCGGTGGTGGGGGCTATGGAAGCTATGGTGGTCCTGGCACTGGTGGGGGCTATGAATCAGGCCCTGGTGCTGGTTATGGCGGGGCAGGAGGAGGACTGTATCCTAGTAGGGGAAGTTATGGGGGTAGTAGTCGATACCATCCTTATGCAAGATAG 1047 0.4804 MASRKIDSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNMLTDGNMIDMAGTQVEIKKAEPKKSSNPGSLPPFARDSRAHSYNDGFGGFGDSYGSFAGGSYGPASYRSLGGFGGRLGDYGGYGGGDDFSGGFGGYGAGAGGYAGYRGESSFGYSSRYGSYMGGLGGGYGSGGLGAYGRGGGGYGSYGGPGTGGGYESGPGAGYGGAGGGLYPSRGSYGGSSRYHPYAR* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00146 348 SUPERFAMILY RNA-binding domain, RBD 9 95 IPR035979 GO:0003676
Rops10g00146 348 SMART rrm1_1 16 87 IPR000504 GO:0003723
Rops10g00146 348 SMART rrm1_1 104 177 IPR000504 GO:0003723
Rops10g00146 348 Gene3D - 94 214 IPR012677 -
Rops10g00146 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Rops10g00146 348 Gene3D - 15 93 IPR012677 -
Rops10g00146 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 4 348 - -
Rops10g00146 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 95 - -
Rops10g00146 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 96 221 - -
Rops10g00146 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Rops10g00146 348 SUPERFAMILY RNA-binding domain, RBD 96 208 IPR035979 GO:0003676
Rops10g00146 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 83 IPR000504 GO:0003723
Rops10g00146 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00146 Rops-Chr10 4508360 4511709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00146 8 167 Eukaryotic Initiation Factors Gene Family AT1G71770 28.333 7.99e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00146 K12741 - gmx:100801373 389.037