Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00143 ATGGTTGAAGCTTCAAGGATCATGTTCACAACTCTTATTCCTGGTTTTAGCCCAACACTTCAGAGAACCCATCTGGGTCTGGGTCTGCCTCAACTAACTGTCTCACGCAAGCACCAAATTCATTGTTCATTCTCTGCAAGTGCTAATGCAAATAGTGCCACTCAAAGTTCAACCTCAGTGTTAGAAACTATTCCTTGGGGCTGTGAGATTGATTCACCAGAAAATGCATCAGCTCTGCAAAAATGGTTGTCAGAGTCAGGCCTTCCACCGCAGAAGATGGCCATAGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCCTTGAAAAATATAAGGAAAGGGGAGAAGCTTCTCTTTGTGCCTCCATCACTTGTCATAACTGCTGATTCTGAATGGAGCTGCCCAGAAGCTGGTGAAGTATTGAAAAGGAATTCAGTGCCAGATTGGCCACTTATTGCAACTTATCTCATTAGTGAAGCTAGCCTTATGAAATCTTCAAGATGGTGCAATTATATATCGGCCTTGCCACGTCAACCTTACTCCCTTCTTTACTGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTCTCCAAATACCCTGATTTATTCCCTGAAGAGGTGTTCAACATGGAGTCTTTCAAATGGTCATTTGGCATTCTTTTCTCCCGCTTGGTTCGGCTACCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGTTGAATCATAGTTGTGATGTGGAGACATTCTTGGATTATGATAAGACGACAAAGGGAATTGTCTTCACAACAGATCGACCCTATCAACCAGGTGAGCAGGTGTTTATCTCATATGGGAAAAAATCAAACGGGGAGCTTCTGTTATCTTATGGATTTGTTCCAAAGGAGGGTGATAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTTAAGAAATCTGATGGGTCCTACAATGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATCAGGATCTCAGTGTTTTCCTGTACAGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGAGGAATTTGAAAAGATGGCTGCTGCGGCATCTAATAAAACTAACTCTAAGAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGTTGTGAATCCAGTATATCAAAGTACAACAAGTTCTTACAGGTAAGTGGATCATTGGATTTGGATGTGACTTCTCCAAAACAACTCAACCGAAGACTGTTTCTAAAACAGCTTGCTGTGGACTTGTGTACTAGTGAGCGAAGGATATTATTCCGTGCTCAATATATACTGCGAAGAAGACTGAGGGACATGAGGGTTGGTGAATTGAGGGCCCTAAAAATCTTTGATGGGTTCCGGAATCTTTTCAAATGA 1521 0.4155 MVEASRIMFTTLIPGFSPTLQRTHLGLGLPQLTVSRKHQIHCSFSASANANSATQSSTSVLETIPWGCEIDSPENASALQKWLSESGLPPQKMAIEKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSEWSCPEAGEVLKRNSVPDWPLIATYLISEASLMKSSRWCNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPEEVFNMESFKWSFGILFSRLVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKTTKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGDNPSDSVELSLSLKKSDGSYNEKLELLKKYGLSGSQCFPVQITGWPLELMAYAYLAVSPSSMREEFEKMAAAASNKTNSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRRLRDMRVGELRALKIFDGFRNLFK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00143 506 SMART set_7 91 313 IPR001214 GO:0005515
Rops10g00143 506 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 68 444 - -
Rops10g00143 506 PIRSF RMT_SET 5 503 IPR011192 GO:0009507|GO:0030785
Rops10g00143 506 Gene3D - 325 495 IPR036464 -
Rops10g00143 506 CDD SET_RBCMT 90 321 IPR044431 GO:0016279|GO:0018022
Rops10g00143 506 Pfam Rubisco LSMT substrate-binding 340 473 IPR015353 -
Rops10g00143 506 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 337 491 IPR036464 -
Rops10g00143 506 Gene3D set domain protein methyltransferase, domain 1 34 320 - -
Rops10g00143 506 Pfam SET domain 103 307 IPR001214 GO:0005515
Rops10g00143 506 ProSiteProfiles SET domain profile. 91 307 IPR001214 GO:0005515
Rops10g00143 506 FunFam Rubisco methyltransferase family protein 326 489 - -
Rops10g00143 506 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 57 320 - -
Rops10g00143 506 SUPERFAMILY SET domain 74 324 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00143 Rops-Chr10 4432556 4437831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00143 78 276 NAC Transcription Factor Family AT3G56570 21.393 5.27e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops10g00143 SET 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00143 - - cam:101500121 857.44