Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00137 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGATCAATTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGTCCATCTCCCTGTGGTCAATTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAGCTCAGAGATGTTTTAATGCCTCATCTGCTGAAAACCCTAATGAGAATATTATGGGTCCTCAAGGTTTTTCACCAAACTTGATCACTAATCCCTCAACATTACAATATTATGGGAATATTACTCCAATGGACCCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGATTTGAAGAGAGTTGTGACATGCAAAGACAGTGGTCCTTTCATGAAGTGTATAACCTTCAGTAA 474 0.3987 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSKLLVHLPVVNLQAQLVYLREQAAQRCFNASSAENPNENIMGPQGFSPNLITNPSTLQYYGNITPMDPNPIGNYENSGTMEESISFSRFEESCDMQRQWSFHEVYNLQ* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00137 157 ProSiteProfiles LOB domain profile. 6 117 IPR004883 -
Rops10g00137 157 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 58 - -
Rops10g00137 157 Pfam Lateral organ boundaries (LOB) domain 7 64 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00137 Rops-Chr10 4310392 4311077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00137 1 86 AS2 family AT2G42440 50.000 1.94e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops10g00137 LOB 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00137 K13945 K13944 gmx:100816960 202.601