Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00134 ATGAGGCCTATTTTTGCTGGGAACTTGGAGTATGATACCCGTCAATTGGAGCTTGAACGTTTGTTCTCCAAGTATGGAAGGATTCACCGCGTGGACATGAAATATGGTTTTGCTTTTGTTTATTATGAGGATGAGCGTGATGCTGAAGAAGGAATCCGTGCCCTTGACAATTTTCCATTTGGTCATGAAAAAAGAAGGCTATCTGTGGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGACTCAAAGCCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCATTTCGTACTAGAGTTTGTGACATTGAAAAACACTTTGAACCTTATGGAAAGGTTCTTCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATACTACTAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTAGACTGGATGGGCTATGGAGGATGCTAA 480 0.4167 MRPIFAGNLEYDTRQLELERLFSKYGRIHRVDMKYGFAFVYYEDERDAEEGIRALDNFPFGHEKRRLSVEWARGERGRHRDDSKPNQRPTKTLFVINFDPFRTRVCDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDTTKALECTNMSKILDWMGYGGC* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00134 159 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Rops10g00134 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Rops10g00134 159 SMART rrm1_1 3 70 IPR000504 GO:0003723
Rops10g00134 159 SMART rrm1_1 92 154 IPR000504 GO:0003723
Rops10g00134 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Rops10g00134 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 150 IPR000504 GO:0003723
Rops10g00134 159 Gene3D - 84 154 IPR012677 -
Rops10g00134 159 Gene3D - 1 83 IPR012677 -
Rops10g00134 159 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 106 - -
Rops10g00134 159 SUPERFAMILY RNA-binding domain, RBD 2 150 IPR035979 GO:0003676
Rops10g00134 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00134 Rops-Chr10 4220385 4220864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00134 4 158 Eukaryotic Initiation Factors Gene Family AT4G34110 26.036 8.30e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00134 K12893 - gmx:100797709 285.804