Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g00134 | ATGAGGCCTATTTTTGCTGGGAACTTGGAGTATGATACCCGTCAATTGGAGCTTGAACGTTTGTTCTCCAAGTATGGAAGGATTCACCGCGTGGACATGAAATATGGTTTTGCTTTTGTTTATTATGAGGATGAGCGTGATGCTGAAGAAGGAATCCGTGCCCTTGACAATTTTCCATTTGGTCATGAAAAAAGAAGGCTATCTGTGGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGACTCAAAGCCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCATTTCGTACTAGAGTTTGTGACATTGAAAAACACTTTGAACCTTATGGAAAGGTTCTTCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATACTACTAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTAGACTGGATGGGCTATGGAGGATGCTAA | 480 | 0.4167 | MRPIFAGNLEYDTRQLELERLFSKYGRIHRVDMKYGFAFVYYEDERDAEEGIRALDNFPFGHEKRRLSVEWARGERGRHRDDSKPNQRPTKTLFVINFDPFRTRVCDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDTTKALECTNMSKILDWMGYGGC* | 160 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g00134 | 159 | FunFam | Serine/arginine-rich splicing factor RS31 | 1 | 85 | - | - | |
Rops10g00134 | 159 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Rops10g00134 | 159 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Rops10g00134 | 159 | SMART | rrm1_1 | 92 | 154 | IPR000504 | GO:0003723 | |
Rops10g00134 | 159 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 62 | IPR000504 | GO:0003723 | |
Rops10g00134 | 159 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 93 | 150 | IPR000504 | GO:0003723 | |
Rops10g00134 | 159 | Gene3D | - | 84 | 154 | IPR012677 | - | |
Rops10g00134 | 159 | Gene3D | - | 1 | 83 | IPR012677 | - | |
Rops10g00134 | 159 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 4 | 106 | - | - | |
Rops10g00134 | 159 | SUPERFAMILY | RNA-binding domain, RBD | 2 | 150 | IPR035979 | GO:0003676 | |
Rops10g00134 | 159 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 91 | 159 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g00134 | Rops-Chr10 | 4220385 | 4220864 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g00134 | 4 | 158 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.036 | 8.30e-08 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g00134 | K12893 | - | gmx:100797709 | 285.804 |