Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00110 ATGGAGAAGCACGTCGTTCAGATCTTCGAGAGGACGAAGCAGATCATCGACTGTTATCTTTGGGAGCATCACCTTTTCCTCAAACTCCGCACTTCACTCCACGGCCTCAGATCCCAAAGGTTATTAGTTATCCAGTTGCTGAGTTTGCTGTTAGAAAAAGGTGTTTGGAATCTGGAAGAGGTTTCTATGATGGCAAATAACTTAACTGGTCAGTTGGTGGGTTCAGAGATACATGGATTCCACACATTGCAAGAGTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAAACAGATGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTTTTTCACCATCAATGTCAAGCCAGTGAATTTGCCCAAAAGTGGTACTATTATATTATTGGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCGCAACTGGAAAAAGAAAAAAGATGGAAAAGCTGTTAAAGAAGCTCATGAGCACTTAAAGATTTCACATGAAGTTTCCCAGTCTAATGTCACTGGGTGGGGCAGACGACCGGCAGCTCTTCGAGCACTTGGCCTGAGACTAAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACAATTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCTGTCACTGCTGCACGGCTTCCATCCTTTCTTACCTGTGTTGGTGCAAATGAGGAAAGGCTAACTCCAAAATGGTATAAAGAACATGGTATTGCCCTCAGCAAGAATGGTGAAGCTACAAAAGTTATTTCTGAGGAACAGCTTAGCCCTGCTGAAATGGCACTCAGGATTAAGCTATTGCAAGAAGACTCAGGATTAAGCTATTGCAAGAAGACAGTTGCTCTGGCTCAGAATGCCATGCAGTGCAAGTTGCAGAAGCTTCATAAGGAACTTGTGTCTAGTGGTAAGCTTACAGAATCAGAATTTTGGGCTACGAAGAAGGAGTCAAGGATAGAGAGTAACAATGGGGCTGCCTTTGATGTTGAGGTGAGGAAATGGGTCAGTGGTGACATGGACGAAGGCGAGGGAGGGGCACATCCAAGACATCTAACAATACCTTAG 1167 0.4422 MEKHVVQIFERTKQIIDCYLWEHHLFLKLRTSLHGLRSQRLLVIQLLSLLLEKGVWNLEEVSMMANNLTGQLVGSEIHGFHTLQELDVGSIMEEARNRWLRPNEIHAMLCNYKFFTINVKPVNLPKSGTIILLDRKMLRNFRKDGRNWKKKKDGKAVKEAHEHLKISHEVSQSNVTGWGRRPAALRALGLRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVTAARLPSFLTCVGANEERLTPKWYKEHGIALSKNGEATKVISEEQLSPAEMALRIKLLQEDSGLSYCKKTVALAQNAMQCKLQKLHKELVSSGKLTESEFWATKKESRIESNNGAAFDVEVRKWVSGDMDEGEGGAHPRHLTIP* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00110 388 SMART CG_1_2 91 193 IPR005559 GO:0003677
Rops10g00110 388 Pfam CG-1 domain 94 169 IPR005559 GO:0003677
Rops10g00110 388 SUPERFAMILY BSD domain-like 325 348 IPR035925 -
Rops10g00110 388 Gene3D - 317 349 - -
Rops10g00110 388 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 87 166 - -
Rops10g00110 388 ProSiteProfiles CG-1 DNA-binding domain profile. 88 234 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00110 Rops-Chr10 3508009 3515339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00110 64 169 CAMTA Transcription Factor Family AT4G16150 76.415 4.79e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00110 K21596 - gmx:100793970 196.052