Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00093 ATGGGTCGGTGCCGAACCTCGTTGCGCCCCACTGAAGATGACCCGAACCAGAGATCCAAGAGAAAGAGGTCTGCTTTGAATGCAGAGAATTTGGAAACTTTATCTACAGGCCAAGGAATGACTGATGGCAAGGGATCTCTATATCACTGTAATTATTGCTACAAAGATATTTCGGGGAAGATTCGTGGCAAGTGTGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTGCTCTGTTGGTGCTGAGGTGACACCTCACAAAAGCAATCATCCATATCGGATTATGGATAATCTATCTTTTCCACTTATATGTCCGGATTGGAATGCAGATGAAGAGATGTTACTTTTAGAGGCCCTTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATTTGTTGGAACGAAAAGCAAATCTCAATGCATTGACCACTATAATGCTCTATATATGAATTCACCATTTTTCCCTCTCCCTGATTTGTCCCATGTTATGGGAAAGAGCAGAGAGGAACTCCTTGACATGGCGAAGGGACATGAAGTCAAGAAAGAATTTCCACCAAATGCAGAGCTTAATCTCAAAGAAGAACCTCCGTCCTCTGATGGAATAAACATTGAAGAATCTAAGAATGCTGAAACCACTAATCAAACAATGTCAAGGTTAACCTCAGTATGTGACAAAACCTATTCAAGTACAATTAAGAAGGCTTCGAACCTGAGCCTGAATAATGATGGAGTTAAGGTGGAAGGATCTCAAGCAGGTTGGAGCATTGGAGAGAAAAAACTTAGATCATCTGGGGAAGATAGGCCTTCTATGACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGAAATTGAATACGACAATGATGCAGAGCAAGTATTGGCAGATATGGAATTTAAGGACACTGATACTGAAGCTGAACGGGAAATGAAACTGCGTGTGCTCCGTATCTACTCAAAAAGGTTAGATGAACGAAAGCGCAGAAAAAATTTTATACTCGAAAGAAATTTACTTTATCCTGATCCTTTTGAGAAATATCTTTCACCCGAAGAGCTTCAAATATGTCAACGCTACAAGGTCTTCAGTCGGTTTCACTCAAAAGAAGAGCATAAGGAGTTGCTAAAAAATATTATTGAAGAACACCAGCTAGTCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGCTGAAGCTTATCGATTTATTGAACACAAGAGGAAAAAGGAAGCTGAACAAAGTGCCAGTAAAGAAAGTAGTCAGATTGGAACAAGTGCTAATAAGACATTACAGAGGCCAAATTATCCCAAAGGGGAATTTGATAGTAGCCCAAGGGGTCTTCATAAGGGGACTACAGCATCATTTGCTGGTGTCAAGGATTCACCTACCGCCATACAAGCTATCACAAGGTCACTAGAAGAATGGGATATCAGTGGATTTGAAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTAATGAGATCAGAATACTCCCGTCACACTATATCAAAATGCTGCAGATCATGTCATTAGAAATTTCAAAGGGCAGTGTAACCAAGAAATCTGATGCACATAAACTGTTCAAGGTAGAACCAAGCAAGGTTGATAGAGTTTATGACATGCTTGTGAAAAGGGGAGTTGTTCAAGCATAA 1686 0.4009 MGRCRTSLRPTEDDPNQRSKRKRSALNAENLETLSTGQGMTDGKGSLYHCNYCYKDISGKIRGKCVVCQDFDLCIECCSVGAEVTPHKSNHPYRIMDNLSFPLICPDWNADEEMLLLEALEMYGFGNWNEVAEFVGTKSKSQCIDHYNALYMNSPFFPLPDLSHVMGKSREELLDMAKGHEVKKEFPPNAELNLKEEPPSSDGINIEESKNAETTNQTMSRLTSVCDKTYSSTIKKASNLSLNNDGVKVEGSQAGWSIGEKKLRSSGEDRPSMTELSGYSFKREEFEIEYDNDAEQVLADMEFKDTDTEAEREMKLRVLRIYSKRLDERKRRKNFILERNLLYPDPFEKYLSPEELQICQRYKVFSRFHSKEEHKELLKNIIEEHQLVKRIQDLQEARIAGCVTAAEAYRFIEHKRKKEAEQSASKESSQIGTSANKTLQRPNYPKGEFDSSPRGLHKGTTASFAGVKDSPTAIQAITRSLEEWDISGFEGAELLSESEKKLCNEIRILPSHYIKMLQIMSLEISKGSVTKKSDAHKLFKVEPSKVDRVYDMLVKRGVVQA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00093 561 SMART zz_5 44 89 IPR000433 GO:0008270
Rops10g00093 561 SUPERFAMILY Homeodomain-like 477 560 IPR009057 -
Rops10g00093 561 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Rops10g00093 561 Pfam Zinc finger, ZZ type 47 87 IPR000433 GO:0008270
Rops10g00093 561 FunFam Transcriptional adapter 41 96 - -
Rops10g00093 561 CDD ZZ_ADA2 48 96 IPR041983 -
Rops10g00093 561 FunFam Transcriptional adapter 2 476 560 - -
Rops10g00093 561 MobiDBLite consensus disorder prediction 1 37 - -
Rops10g00093 561 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Rops10g00093 561 Gene3D - 42 96 IPR043145 -
Rops10g00093 561 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Rops10g00093 561 PIRSF Txn_adaptor_ADA2 35 561 IPR016827 GO:0003713|GO:0006357|GO:0035065
Rops10g00093 561 MobiDBLite consensus disorder prediction 1 27 - -
Rops10g00093 561 Gene3D - 106 155 - -
Rops10g00093 561 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 555 - -
Rops10g00093 561 SMART sant 104 153 IPR001005 -
Rops10g00093 561 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Rops10g00093 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Rops10g00093 561 ProSiteProfiles SWIRM domain profile. 475 561 IPR007526 GO:0005515
Rops10g00093 561 FunFam Transcriptional adapter 2 101 153 - -
Rops10g00093 561 MobiDBLite consensus disorder prediction 425 441 - -
Rops10g00093 561 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Rops10g00093 561 MobiDBLite consensus disorder prediction 417 463 - -
Rops10g00093 561 SUPERFAMILY RING/U-box 48 111 - -
Rops10g00093 561 Gene3D - 475 561 IPR036388 -
Rops10g00093 561 CDD SANT 123 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00093 Rops-Chr10 2804894 2838298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00093 1 558 EF-hand Containing Proteins AT3G07740 55.245 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g00093 Myb_DNA-binding 9.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00093 K11314 - gmx:100779424 882.478