Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00092 ATGGAAGCAAACAAAGAGGAGGCACTTAAAGTAAAAGGGATTGCTGAGAAGCTATTTGCTCAAAGAGACTTTGTAGGAGCAAAAAGTTATGCTTTAAAGGCCAAAGCACTTTGTCCTGGATTGGAGGGTATATCTGAAATGGTGACCACTTTTGAAGTTTACGTTGCCTCTCAAGTCACCTACAATGGTGAGCTTGATTATTATTATTCCATTCTTGGCTTAAAACCTTCAGCAGATTTAGAAACTGTTAAGAAACAGTACAAGAAGATGTCTGTGTTGCTTCACCCTGATAAGAACAAATGTGTTGGAGCTGACGGGGCATTTAATCTTGTCTCCGAGGCATTTGCGTGGCTGTCAGATAGTTCCGTGCGTGGTTCTTATGATCTCAAGAGAAATGCACAGTTGGGTGCAACAGGTTTTAGCAAATGTTCCAATTTGTCAAACTCTGGTGGTGCTAATCATGGTACATTTTGGACTATTTGCACTTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAATATGTGAATAAGAAACTTTCTTGTAAGAATTGCCGTGGGACTTTCATTGCTGTTGAAACAGGAGCAGCCCCAGCAAATGGTTCATTCCCGTATTCTCCTTGGTCCTATGCGGCTGGCAGTGGGTATGGAAGCCGTTCTTTTGATGGAGTTACATATGTTCCAAGTAGTGGCCCCTATTACACTGGGAATGGGGTCACTGGGTACCATTCGGGACATGGATATGAGTATGTTTCAAATGTTTCATATCAGTGGAGCTCTGCAGGGTTTGTCAATCAAAATGGATCAACTACCTTACCTGCTGATTCTGTTTGTCAGGCCAATGGGAATGTAAAGATGGGAAGGCCAAAAGTTAAATCAGGAGCTGATAGGAAGCATTACATGACAGAGAATGTGGTCAATATGAAGTCAGATGTATCATTCCCCTGTAATGAACAACAGGAAGTTAAGCCGAGTAGACCTGAGAAGAAAAGGAAAGTTGTGGCAGCCAGTTTCAGAAATGGTCATGAAGATAAGGGTTCAAAATGTGCTTCAGAATCAACATTTGCTAATGGAAATGAAAGCGTTGGACATGGTCAGAAGCTTTCCTGCACAAGTGAAGTGCCAACCAAACAGCATTCCATGGCACCAGCTTTTGATGCAAGAAAATTATTGATTGAGAAAGCCAGGACAGAAATCAGGAAGAAACTGGAAGAGATGAAGTTGGCATCTGAAGCTGCTGCTGCTGCTAATGAGAGAGAAAAATCACAAGCTGAAGGTGGTCAAGTCAAAAGAGACACACACGGAAAAACAGTGCTGAATGTTTCTGGTAATCAGTTAGAACATAGGAAAATTGGTCCTGCATCAATAACTGTCCCAGATTCTGACTTTCATGACTTTGATAAAGATAGGTTGGAGGAATGTTTCAGGCCAAAGCAGATATGGGCCTTATATGATGAGGAGGATGGCATGCCTCGCCTGTATTGTCTGATCCGCGAGGTTATCTCTGTCAATCCATTCAAGATTCACATTAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCGGTGAACTGGCTTGATTCAGGTTTCACCAAATCTTGTGGAAATTTCAGGGCCATGAACTCTGATGTTATTGATCAAGTTAACATTTTTTCTCATATTCTAAGCTTGGTGAAGGCCGGTCGTGGTGGTTGTGTTCGCATATATCCCAAAAGTGGAGACATTTGGGCTCTTTATAGAAATTGGTCAAAGGATTGGAACAGATCTACACCAGATGAAGTGAGGCATCGGTATGAAATGGTGGAGGTACTGGATGATTATTCTGAGGAGCTTGGTGTTTGTGTTAGTCCCCTTATTAAGTTGGCTGGATTCAAAACAGTGTATCAGAGGAATACAGACAAAAGTGCCATTAGATGGATACCAAGAAGAGAAATGTTGTGCTTTTCACACCAAGTACCTTCATGGTTGCTGAAGGGGGAGGAAGCAAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCAGCTGCAACTCCAGATGAGCTCCTTCATGCTGCTGCTACAGAAGCAATCGTTTCATAG 2079 0.4233 MEANKEEALKVKGIAEKLFAQRDFVGAKSYALKAKALCPGLEGISEMVTTFEVYVASQVTYNGELDYYYSILGLKPSADLETVKKQYKKMSVLLHPDKNKCVGADGAFNLVSEAFAWLSDSSVRGSYDLKRNAQLGATGFSKCSNLSNSGGANHGTFWTICTSCKVQYEYLRKYVNKKLSCKNCRGTFIAVETGAAPANGSFPYSPWSYAAGSGYGSRSFDGVTYVPSSGPYYTGNGVTGYHSGHGYEYVSNVSYQWSSAGFVNQNGSTTLPADSVCQANGNVKMGRPKVKSGADRKHYMTENVVNMKSDVSFPCNEQQEVKPSRPEKKRKVVAASFRNGHEDKGSKCASESTFANGNESVGHGQKLSCTSEVPTKQHSMAPAFDARKLLIEKARTEIRKKLEEMKLASEAAAAANEREKSQAEGGQVKRDTHGKTVLNVSGNQLEHRKIGPASITVPDSDFHDFDKDRLEECFRPKQIWALYDEEDGMPRLYCLIREVISVNPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAMNSDVIDQVNIFSHILSLVKAGRGGCVRIYPKSGDIWALYRNWSKDWNRSTPDEVRHRYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYQRNTDKSAIRWIPRREMLCFSHQVPSWLLKGEEASNLPERCWDLDPAATPDELLHAAATEAIVS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00092 692 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Rops10g00092 692 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Rops10g00092 692 Pfam DnaJ domain 68 128 IPR001623 -
Rops10g00092 692 MobiDBLite consensus disorder prediction 413 434 - -
Rops10g00092 692 Pfam Domain of unknown function (DUF3444) 453 661 IPR024593 -
Rops10g00092 692 SMART dnaj_3 66 123 IPR001623 -
Rops10g00092 692 SUPERFAMILY Chaperone J-domain 59 132 IPR036869 -
Rops10g00092 692 Coils Coil 391 418 - -
Rops10g00092 692 Gene3D DnaJ domain 66 168 IPR036869 -
Rops10g00092 692 CDD DnaJ 68 120 IPR001623 -
Rops10g00092 692 PANTHER BNAC03G44070D PROTEIN 1 678 - -
Rops10g00092 692 PRINTS DnaJ domain signature 87 102 IPR001623 -
Rops10g00092 692 PRINTS DnaJ domain signature 103 123 IPR001623 -
Rops10g00092 692 PRINTS DnaJ domain signature 69 87 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00092 Rops-Chr10 2793036 2796239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00092 4 249 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.517 4.39e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00092 - - gmx:100788692 1094.72