Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00088 ATGACCTTCATCGACGACGGCATCGACCTTGACCCATCAGATTTCGCAGCATCAGTCCCATTGAAGAAGGTCCCACACGGCGACGTATTTGAAGCCTCACGTGCTGGTGACGTGGAGCGTCTCCGGTACCTTCTGGAATCAGGAGTGAACGTGAACGCACGTGACCAGTGGGACTCAGTGGCTCTCTACTACGCTTGTCTCGCCGGCCACCTCGACGCCGCACGCATGCTCCTCGAGAGTGGCGCAATCTGCTCCGAACACACCTTCGATGGTGACCGTTGCCACTACGCAGCACTGAATTTGAAGATTCGAAAACTCCTCAAAGCATTTGAAGCTCGTCCTCCTCCATTGGACCCGTTACAAGCTTCCTTGCGTGACACCTTCTTAAGCTGCCCTGCTAACTCACAACCTCACTTTCAAGTTCCCGGTATTTCATCCACTCAGGGGTCCAGTAGCAGCTACTTTCCTCCAGATGTGGTTTTTATTGTACAAGGAAGGCCTATTGAAGCTCACAGAGTCATTTTAAGCGCAAGGTCACCATTTTTCAAGAAAAAGTTTGAGACTGATTGGAAAGAGCGCAGTGAAGTAAGATTTGCAGGGGAAAAGTTGTCATATCCTGCACTTTATAGCCTTATTCACTTCTTTTATTCAGACAGATTAGAGATTGCTGTGGATGACATGGAAGATCTTGTGAGAATCTGCAAAGTATGCAAATGCGAATCACTACAGAAAATTCTTGAGAAAGAAGTGATTCATCAAAAATATGCAGAGTATAAAGCACTGAGAGATGTAGATAATTCTCAGAAACGGTATATTTTACAGGGTCTATCCCTCCCTGAAGAAGACAGACTTCCTGCAGCCTTGCGTCGAATCCTTCTGACTGCCCTTTCAAATTCCACTGACAAAAATGGTCAAGGTGATGGAATTGATAAATTGGTATCTAGTATGGGTGCCATGCAGATCACTAAATCTCTAGATGATCTTGCTGATGTTTGTGTAAGAGTTGATAGAAAAGTTTTCCGCTGCCATAAAGTTATTCTAGCTTCGAGGTCAGAATATTTCAAAGCAAGATTGTCACATATGAAGGATTTCCATGAAGGGAAAGATGAATCATCCGTTGACTTCCTTCCCTGTCTTGAAGAACATGACATGAGCACGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGATGGTTTGCAGGATATAAATCCAGATCAGGTCGAGGAAATGTTGGATGTTGGTTCTAGATACTTGTTGTTTCCTCTTAAGCGTGCAGTGGCTGATGTCTTGTTGCCACACTTGGAAATGGTGTCACCTGAGGAACTTTGCCATTGGTTAATACTAGCAGACATGTATGGTGTTATTAAGATTCGGGAATATTGTCTAGACACCATTGCTTGTAATTTTGAAACATTCGCTGATACTAAAGAATTCCGGGCTATGCTGTTAACTTTCCCTCCACCATCTGGTGACTCGTCTCTTCGTACCACTGTCCCAAGCATTCCTGGAGCTGCTCTAAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGAAATTGAAGCTGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTTGCAGAGCAAGAAAAATCAACAGGCAATGCTGATTCAGATGGTATTGATGATGTTACACCCTTGGCTTTCTCCCCAATCACCACACTAATTTCAGATGAACAAAAAGAACTGTAG 1767 0.4386 MTFIDDGIDLDPSDFAASVPLKKVPHGDVFEASRAGDVERLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKIRKLLKAFEARPPPLDPLQASLRDTFLSCPANSQPHFQVPGISSTQGSSSSYFPPDVVFIVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRFAGEKLSYPALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKILEKEVIHQKYAEYKALRDVDNSQKRYILQGLSLPEEDRLPAALRRILLTALSNSTDKNGQGDGIDKLVSSMGAMQITKSLDDLADVCVRVDRKVFRCHKVILASRSEYFKARLSHMKDFHEGKDESSVDFLPCLEEHDMSTEAFEKMIEYMYTDGLQDINPDQVEEMLDVGSRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADMYGVIKIREYCLDTIACNFETFADTKEFRAMLLTFPPPSGDSSLRTTVPSIPGAALNTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSTGNADSDGIDDVTPLAFSPITTLISDEQKEL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00088 588 FunFam BTB/POZ domain-containing protein 151 273 - -
Rops10g00088 588 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 552 IPR044515 -
Rops10g00088 588 SMART BTB_4 157 254 IPR000210 GO:0005515
Rops10g00088 588 SMART BTB_4 329 436 IPR000210 GO:0005515
Rops10g00088 588 Gene3D Potassium Channel Kv1.1; Chain A 149 272 IPR011333 -
Rops10g00088 588 Gene3D Potassium Channel Kv1.1; Chain A 310 468 IPR011333 -
Rops10g00088 588 Pfam Ankyrin repeats (many copies) 31 78 IPR002110 GO:0005515
Rops10g00088 588 Gene3D - 29 114 IPR036770 -
Rops10g00088 588 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Rops10g00088 588 ProSiteProfiles BTB domain profile. 157 224 IPR000210 GO:0005515
Rops10g00088 588 SUPERFAMILY POZ domain 154 249 IPR011333 -
Rops10g00088 588 Pfam BTB/POZ domain 156 253 IPR000210 GO:0005515
Rops10g00088 588 Pfam BTB/POZ domain 326 432 IPR000210 GO:0005515
Rops10g00088 588 FunFam BTB/POZ domain-containing protein 23 145 - -
Rops10g00088 588 CDD BTB_POZ_ZBTB_KLHL-like 328 419 - -
Rops10g00088 588 CDD BACK 440 483 - -
Rops10g00088 588 ProSiteProfiles BTB domain profile. 329 405 IPR000210 GO:0005515
Rops10g00088 588 SUPERFAMILY Ankyrin repeat 31 108 IPR036770 -
Rops10g00088 588 SUPERFAMILY POZ domain 321 435 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops10g00088 BTB 4.3e-17 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00088 K10520 - gmx:100812009 957.977